View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2827_high_22 (Length: 238)
Name: NF2827_high_22
Description: NF2827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2827_high_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 44374266 - 44374486
Alignment:
| Q |
18 |
actagtagcataaaaactgagtttaaactaattctgcaacaaaatataatgcaaaaccactatatatcccatttcttgtgtttggacttcaagcacatgg |
117 |
Q |
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| T |
44374266 |
actagtagcataaaaactgagtttaaactaattctgcaacaaaatataatgcaaaaccactatatatcccatttcttgtgtttggacttcaagcacatgg |
44374365 |
T |
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| Q |
118 |
aaattcctctgattacaacaaatacaatatacattattcagaagaaaatcataaattaaaatctccatacctcattgatcattgcaatttacaacttgat |
217 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44374366 |
aaattcctctgattacaacaaatactatatacattattcagaagaaaatcataaattaaaatctccatacctcattgaccattgcaatttacaacttgat |
44374465 |
T |
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| Q |
218 |
cctgaatccaatttccccctt |
238 |
Q |
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|||||||||||||| |||||| |
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| T |
44374466 |
cctgaatccaattttcccctt |
44374486 |
T |
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