View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2827_high_23 (Length: 236)
Name: NF2827_high_23
Description: NF2827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2827_high_23 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 7425779 - 7425576
Alignment:
| Q |
18 |
cacagcaccacaagactccctctgcttccaaacaaaagctcgagacattaagagaacatcccctcttcagcagaccgacagaaacaccacagtcagcaac |
117 |
Q |
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| T |
7425779 |
cacagcaccacaagactccctctgcttccaaacaaaagctcgagacattaagagaacattccctcttcagcagaccgacagaaacaccacagtcagcaac |
7425680 |
T |
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| Q |
118 |
aacaagaaaacaccacagacagacccccacctcagactatgaatcaacaatttgtcaatctgccacgacttcggatatttcagacacagcgtaaataatc |
217 |
Q |
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| T |
7425679 |
aacaagaaaacaccacagacagacccccacctcagactatgaatcaacaatttgtcaatctgccacgacttcggatatttcagacacagcataaataatc |
7425580 |
T |
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| Q |
218 |
tgtg |
221 |
Q |
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|||| |
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| T |
7425579 |
tgtg |
7425576 |
T |
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Target: scaffold0066 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 17953 - 18139
Alignment:
| Q |
19 |
acagcaccacaagactccctctgcttccaaacaaaagctcgagacattaagagaacatcccctcttcagcagaccgacagaaacaccacagtcagcaaca |
118 |
Q |
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|||||| || |||||||||||||||||||| ||||||| | |||| || ||||| |||||||| ||| | ||||| |||||||||||| ||||| || |
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| T |
17953 |
acagcatcataagactccctctgcttccaaccaaaagcaccagaccctatgagaatgtcccctctacagacggccgaccgaaacaccacagccagcagca |
18052 |
T |
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| Q |
119 |
acaagaaaacaccacagacagacccccacctcagactatgaatcaacaatttgtcaatctgccacgacttcggatatttcagacaca |
205 |
Q |
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||||||| ||||| ||||| |||||| |||||||||||||||||| || || ||| ||||| | ||||||||||||||||||||| |
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| T |
18053 |
gcaagaaagcaccatagacacaccccctcctcagactatgaatcaaaaaactgccaaactgccgcaacttcggatatttcagacaca |
18139 |
T |
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