View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2827_high_24 (Length: 221)

Name: NF2827_high_24
Description: NF2827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2827_high_24
NF2827_high_24
[»] chr4 (16 HSPs)
chr4 (43-204)||(37928660-37928822)
chr4 (5-45)||(15170881-15170921)
chr4 (5-44)||(38687910-38687949)
chr4 (5-46)||(19485682-19485723)
chr4 (5-45)||(580409-580449)
chr4 (5-45)||(2385193-2385233)
chr4 (5-45)||(6246718-6246758)
chr4 (5-44)||(44200082-44200121)
chr4 (5-47)||(31227381-31227423)
chr4 (5-47)||(53621324-53621366)
chr4 (5-46)||(3162892-3162933)
chr4 (5-46)||(53225754-53225795)
chr4 (5-45)||(4758775-4758815)
chr4 (5-45)||(23125644-23125684)
chr4 (12-44)||(39834273-39834305)
chr4 (5-45)||(55292110-55292150)
[»] chr7 (10 HSPs)
chr7 (5-45)||(12763339-12763379)
chr7 (5-45)||(20397925-20397965)
chr7 (5-45)||(30866355-30866395)
chr7 (1-44)||(5347828-5347871)
chr7 (5-44)||(34281668-34281707)
chr7 (1-46)||(5909468-5909514)
chr7 (5-46)||(5347720-5347761)
chr7 (8-45)||(12085022-12085059)
chr7 (5-46)||(23248665-23248706)
chr7 (5-45)||(7107740-7107780)
[»] chr6 (13 HSPs)
chr6 (5-45)||(7405554-7405594)
chr6 (5-45)||(24949629-24949669)
chr6 (5-45)||(31971028-31971068)
chr6 (5-46)||(14931363-14931404)
chr6 (5-45)||(8558912-8558952)
chr6 (5-44)||(17225242-17225281)
chr6 (5-47)||(885598-885640)
chr6 (5-50)||(30686654-30686699)
chr6 (5-45)||(2972162-2972202)
chr6 (5-45)||(6045791-6045831)
chr6 (5-45)||(6047906-6047946)
chr6 (5-45)||(24949741-24949781)
chr6 (5-45)||(33859600-33859640)
[»] chr2 (16 HSPs)
chr2 (5-45)||(44737281-44737321)
chr2 (5-50)||(7765787-7765832)
chr2 (5-46)||(9152489-9152530)
chr2 (5-46)||(11362995-11363036)
chr2 (5-46)||(43657922-43657963)
chr2 (5-45)||(30864666-30864706)
chr2 (5-45)||(32750340-32750380)
chr2 (5-48)||(6761575-6761618)
chr2 (5-44)||(20427111-20427150)
chr2 (4-45)||(11711433-11711474)
chr2 (5-46)||(13775708-13775749)
chr2 (5-46)||(39377833-39377874)
chr2 (5-45)||(13775821-13775861)
chr2 (5-45)||(29866080-29866120)
chr2 (5-45)||(29866192-29866232)
chr2 (5-45)||(30864785-30864825)
[»] chr8 (13 HSPs)
chr8 (5-46)||(41915704-41915745)
chr8 (5-44)||(45145975-45146014)
chr8 (5-45)||(2339400-2339440)
chr8 (5-45)||(40465236-40465276)
chr8 (5-45)||(42351196-42351236)
chr8 (5-44)||(27793307-27793346)
chr8 (5-47)||(2339286-2339328)
chr8 (5-47)||(25878168-25878210)
chr8 (1-45)||(34028488-34028533)
chr8 (5-45)||(2229068-2229108)
chr8 (5-45)||(29563768-29563808)
chr8 (5-45)||(32159032-32159072)
chr8 (5-45)||(33642568-33642608)
[»] chr3 (17 HSPs)
chr3 (5-46)||(28945766-28945807)
chr3 (5-45)||(39341370-39341410)
chr3 (5-43)||(28564935-28564973)
chr3 (5-46)||(10049778-10049819)
chr3 (5-45)||(51698112-51698152)
chr3 (5-44)||(40214899-40214938)
chr3 (5-47)||(6086897-6086939)
chr3 (5-47)||(28406577-28406619)
chr3 (5-47)||(29019845-29019887)
chr3 (5-46)||(14768095-14768136)
chr3 (5-42)||(19202251-19202288)
chr3 (5-45)||(1122385-1122425)
chr3 (5-37)||(8243688-8243720)
chr3 (5-45)||(23825259-23825299)
chr3 (5-45)||(26999131-26999171)
chr3 (5-45)||(28406465-28406505)
chr3 (5-45)||(28945654-28945694)
[»] scaffold2107 (1 HSPs)
scaffold2107 (5-45)||(553-593)
[»] chr5 (12 HSPs)
chr5 (5-45)||(23411275-23411315)
chr5 (5-48)||(2959234-2959277)
chr5 (5-48)||(2967703-2967746)
chr5 (5-47)||(903962-904004)
chr5 (5-45)||(26898301-26898341)
chr5 (5-45)||(36417045-36417085)
chr5 (5-44)||(31802957-31802996)
chr5 (5-47)||(9601589-9601631)
chr5 (5-46)||(21090373-21090414)
chr5 (5-45)||(3814081-3814121)
chr5 (5-45)||(25027804-25027844)
chr5 (5-45)||(29374280-29374320)
[»] chr1 (11 HSPs)
chr1 (5-45)||(9548782-9548822)
chr1 (5-44)||(45536162-45536201)
chr1 (5-47)||(10065251-10065293)
chr1 (7-44)||(28989384-28989421)
chr1 (5-45)||(2961102-2961142)
chr1 (6-49)||(1673966-1674009)
chr1 (5-44)||(10380389-10380428)
chr1 (5-44)||(26545107-26545146)
chr1 (5-46)||(2352419-2352460)
chr1 (5-37)||(15289883-15289915)
chr1 (5-41)||(40161175-40161211)
[»] scaffold0024 (2 HSPs)
scaffold0024 (5-44)||(36064-36103)
scaffold0024 (5-45)||(35952-35992)
[»] scaffold0221 (1 HSPs)
scaffold0221 (5-44)||(11140-11179)


Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 43 - 204
Target Start/End: Complemental strand, 37928822 - 37928660
Alignment:
Q  43 tatattattagtctcgcattgtttgggttttcggattgtcaagtgtataaatatatttgagtattctcatattaatctaatttttgggatgagatccaac 142  Q
    |||||||||||||||| ||||||||| ||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37928822 tatattattagtctcgtattgtttggattttcaggttgtcgagtgtataaatatatttgagtattctcatattaatctaatttttgggatgagatccaac 37928723  T
Q  143 cacatttatatcaagagcttgttatgatccg-cttgaatcatttgtcgtttccgctcttgaat 204  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  37928722 cacatttatattaagagtttgttatgatccgccttgaatcatttgtcgtttccgctcttgaat 37928660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 15170921 - 15170881
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15170921 aaaagtcaattttctcttgtaaataagaccggagggagtat 15170881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 38687949 - 38687910
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagta 44  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  38687949 aaaagtcaactttctcttgtaaataagaccggagggagta 38687910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 19485682 - 19485723
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtata 46  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  19485682 aaaaatcaattttctcttgtaaataggaccggagggagtata 19485723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 580449 - 580409
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||||||||||||||||||| || ||||||||||||    
T  580449 aaaagtcaattttctcttgtaaataggatcggagggagtat 580409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 2385233 - 2385193
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  2385233 aaaagtcaactttctcttgtaaataggaccggagggagtat 2385193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 6246718 - 6246758
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  6246718 aaaagtcaactttctcttgtaaataggaccggagggagtat 6246758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 44200082 - 44200121
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagta 44  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  44200082 aaaagtaaattgtctcttgtaaataagaccggagggagta 44200121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 31227381 - 31227423
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtatat 47  Q
    ||||||||| ||||||||||||||| ||||| |||||||||||    
T  31227381 aaaagtcaactttctcttgtaaataggaccgaagggagtatat 31227423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 53621366 - 53621324
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtatat 47  Q
    ||||||||| | ||||||||||||| |||||||||||||||||    
T  53621366 aaaagtcaactgtctcttgtaaataggaccggagggagtatat 53621324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 3162933 - 3162892
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtata 46  Q
    ||||||||||||| |||| ||||||||||||||| |||||||    
T  3162933 aaaagtcaattttttcttataaataagaccggagtgagtata 3162892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 53225754 - 53225795
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtata 46  Q
    ||||||||||||| |||| |||||| ||||||||||||||||    
T  53225754 aaaagtcaattttttcttataaataggaccggagggagtata 53225795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 4758815 - 4758775
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| | ||||||||||||| |||||||||||||||    
T  4758815 aaaagtcaactgtctcttgtaaataggaccggagggagtat 4758775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 23125684 - 23125644
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    |||||| |||| ||||||||||||| |||||||||||||||    
T  23125684 aaaagtaaattgtctcttgtaaataggaccggagggagtat 23125644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 39834305 - 39834273
Alignment:
Q  12 aattttctcttgtaaataagaccggagggagta 44  Q
    |||| ||||||||||||||||||||||||||||    
T  39834305 aattgtctcttgtaaataagaccggagggagta 39834273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 55292150 - 55292110
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| ||||||||||||||| ||||||||| |||||    
T  55292150 aaaagtcaaatttctcttgtaaataggaccggaggaagtat 55292110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 12763339 - 12763379
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12763339 aaaagtcaattttctcttgtaaataagaccggagggagtat 12763379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 20397925 - 20397965
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  20397925 aaaagtcaactttctcttgtaaataggaccggagggagtat 20397965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 30866355 - 30866395
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    |||| |||| |||||||||||||||||||||||||||||||    
T  30866355 aaaaatcaactttctcttgtaaataagaccggagggagtat 30866395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5347828 - 5347871
Alignment:
Q  1 atctaaaagtcaattttctcttgtaaataagaccggagggagta 44  Q
    |||||||||| |||| ||||||||||||| ||||||||||||||    
T  5347828 atctaaaagtaaattgtctcttgtaaataggaccggagggagta 5347871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 34281707 - 34281668
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagta 44  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  34281707 aaaagtcaactttctcttgtaaataggaccggagggagta 34281668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5909514 - 5909468
Alignment:
Q  1 atctaaaag-tcaattttctcttgtaaataagaccggagggagtata 46  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||||||    
T  5909514 atctaaaaggtcaattttctcttgtaaataggaccgaagggagtata 5909468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 5347761 - 5347720
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtata 46  Q
    ||||||||| |||||||| |||||| ||||||||||||||||    
T  5347761 aaaagtcaactttctcttataaataggaccggagggagtata 5347720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 12085059 - 12085022
Alignment:
Q  8 agtcaattttctcttgtaaataagaccggagggagtat 45  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  12085059 agtcaattttctcttgtaaataggaccggatggagtat 12085022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 23248706 - 23248665
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtata 46  Q
    ||||||||| ||| ||||||||||| ||||||||||||||||    
T  23248706 aaaagtcaactttatcttgtaaataggaccggagggagtata 23248665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 7107740 - 7107780
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| ||||||||||||||| ||||||||| |||||    
T  7107740 aaaagtcaactttctcttgtaaataggaccggaggtagtat 7107780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 7405554 - 7405594
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7405554 aaaagtcaattttctcttgtaaataagaccggagggagtat 7405594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 24949669 - 24949629
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  24949669 aaaagtcaattttctcttgtaaataggaccggagggagtat 24949629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 31971068 - 31971028
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  31971068 aaaagtcaactttctcttgtaaataagaccggagggagtat 31971028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 14931363 - 14931404
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtata 46  Q
    ||||||||||| ||||||||||||| ||||||||||||||||    
T  14931363 aaaagtcaattgtctcttgtaaatatgaccggagggagtata 14931404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 8558952 - 8558912
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  8558952 aaaagtcaattttctcttgtaaataggactggagggagtat 8558912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 17225281 - 17225242
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagta 44  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  17225281 aaaagtcaactttcacttgtaaataagaccggagggagta 17225242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 885640 - 885598
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtatat 47  Q
    ||||||||| | ||||||||||||| |||||||||||||||||    
T  885640 aaaagtcaactgtctcttgtaaataggaccggagggagtatat 885598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 30686654 - 30686699
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtatattat 50  Q
    |||||||||||||||||||||||||  || ||||||||||| ||||    
T  30686654 aaaagtcaattttctcttgtaaatagaacgggagggagtatcttat 30686699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 2972202 - 2972162
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| |||||||| |||||||||||||| |||||||    
T  2972202 aaaagtcaaatttctcttataaataagaccggatggagtat 2972162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 6045791 - 6045831
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    |||||| |||| ||||||||||||| |||||||||||||||    
T  6045791 aaaagtaaattgtctcttgtaaataggaccggagggagtat 6045831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 6047906 - 6047946
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    |||||| |||| ||||||||||||| |||||||||||||||    
T  6047906 aaaagtaaattatctcttgtaaatatgaccggagggagtat 6047946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 24949741 - 24949781
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    |||||| |||| ||||||||||||| |||||||||||||||    
T  24949741 aaaagtaaattgtctcttgtaaataggaccggagggagtat 24949781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 33859600 - 33859640
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    |||||| || ||||||||||||||| |||||||||||||||    
T  33859600 aaaagttaactttctcttgtaaataggaccggagggagtat 33859640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 44737321 - 44737281
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44737321 aaaagtcaattttctcttgtaaataagaccggagggagtat 44737281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 7765832 - 7765787
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtatattat 50  Q
    ||||||||| ||||||||||||||| ||||||||||||||| ||||    
T  7765832 aaaagtcaactttctcttgtaaataggaccggagggagtattttat 7765787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 9152489 - 9152530
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtata 46  Q
    ||||||||||| | ||||||||||||||||||||||||||||    
T  9152489 aaaagtcaattgtttcttgtaaataagaccggagggagtata 9152530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 11363036 - 11362995
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtata 46  Q
    ||||||||| |||||||||||||||||| |||||||||||||    
T  11363036 aaaagtcaactttctcttgtaaataagatcggagggagtata 11362995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 43657963 - 43657922
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtata 46  Q
    ||||||||| ||||||||||||||||| ||||||||||||||    
T  43657963 aaaagtcaactttctcttgtaaataagtccggagggagtata 43657922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 30864706 - 30864666
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    |||||||||||||||||||| |||| |||||||||||||||    
T  30864706 aaaagtcaattttctcttgtcaataggaccggagggagtat 30864666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 32750380 - 32750340
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  32750380 aaaagtcaactttctcttgtaaataggaccggagggagtat 32750340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 6761575 - 6761618
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtatatt 48  Q
    ||||||||| | ||||||||||||| ||||||||||||||||||    
T  6761575 aaaagtcaactgtctcttgtaaataggaccggagggagtatatt 6761618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 20427111 - 20427150
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagta 44  Q
    |||||||||||||||||| ||||||||||| |||||||||    
T  20427111 aaaagtcaattttctcttataaataagaccagagggagta 20427150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 11711433 - 11711474
Alignment:
Q  4 taaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||| |||| ||||||||||||| |||||||||||||||    
T  11711433 taaaagtaaattgtctcttgtaaataggaccggagggagtat 11711474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 13775749 - 13775708
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtata 46  Q
    |||||| |||| ||||||||||||| ||||||||||||||||    
T  13775749 aaaagtaaattatctcttgtaaataggaccggagggagtata 13775708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 39377874 - 39377833
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtata 46  Q
    |||||| |||| ||||||||||||| ||||||||||||||||    
T  39377874 aaaagtaaattgtctcttgtaaataggaccggagggagtata 39377833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 13775821 - 13775861
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| |||||||| |||||| |||||||||||||||    
T  13775821 aaaagtcaactttctcttataaataggaccggagggagtat 13775861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 29866120 - 29866080
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    |||||| |||| ||||||||||||| |||||||||||||||    
T  29866120 aaaagtaaattgtctcttgtaaataggaccggagggagtat 29866080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 29866192 - 29866232
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| ||| ||||||||||| |||||||||||||||    
T  29866192 aaaagtcaactttatcttgtaaataggaccggagggagtat 29866232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 30864785 - 30864825
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    |||||| |||| ||||||||||||||||| |||||||||||    
T  30864785 aaaagtaaattgtctcttgtaaataagactggagggagtat 30864825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 41915704 - 41915745
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtata 46  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  41915704 aaaagtcaattttctcttgtaaataggaccggagggagtata 41915745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 45145975 - 45146014
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagta 44  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  45145975 aaaagtcaattttctcttgtaaataggaccggagggagta 45146014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 2339400 - 2339440
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  2339400 aaaagtcaactttctcttgtaaataggaccggagggagtat 2339440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 40465276 - 40465236
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||||||||||||||||||| || ||||||||||||    
T  40465276 aaaagtcaattttctcttgtaaataggatcggagggagtat 40465236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 42351236 - 42351196
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  42351236 aaaagtcaacattctcttgtaaataagaccggagggagtat 42351196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 27793307 - 27793346
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagta 44  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  27793307 aaaagtcaactttctcttgtaaataggaccggagggagta 27793346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 2339328 - 2339286
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtatat 47  Q
    |||||| |||| ||||||||||||| |||||||||||||||||    
T  2339328 aaaagtaaattgtctcttgtaaataggaccggagggagtatat 2339286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 25878210 - 25878168
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtatat 47  Q
    |||||||||||||||||| |||||| ||| |||||||||||||    
T  25878210 aaaagtcaattttctcttataaataggactggagggagtatat 25878168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34028488 - 34028533
Alignment:
Q  1 atctaaaag-tcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| |||| ||||||||||||||| |||||||||||||||    
T  34028488 atctaaaaggtcaactttctcttgtaaataggaccggagggagtat 34028533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 2229108 - 2229068
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| | ||||||||||||| |||||||||||||||    
T  2229108 aaaagtcaactgtctcttgtaaataggaccggagggagtat 2229068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 29563768 - 29563808
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| ||||||||||||||| ||||||||| |||||    
T  29563768 aaaagtcaactttctcttgtaaataggaccggaggaagtat 29563808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 32159072 - 32159032
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| ||||||||||||||| ||||| |||||||||    
T  32159072 aaaagtcaaatttctcttgtaaataggaccgaagggagtat 32159032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 33642568 - 33642608
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    |||| |||| ||||||||||||||||||||||| |||||||    
T  33642568 aaaaatcaactttctcttgtaaataagaccggatggagtat 33642608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 28945766 - 28945807
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtata 46  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  28945766 aaaagtcaattttctcttgtaaataggaccggagggagtata 28945807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 39341410 - 39341370
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  39341410 aaaagtcaattttctcttgtaaataggaccggagggagtat 39341370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 28564973 - 28564935
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagt 43  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  28564973 aaaagtcaattttctcttgtaaataggaccggagggagt 28564935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 10049778 - 10049819
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtata 46  Q
    ||||||||||| ||||||||||||| ||||||||||||||||    
T  10049778 aaaagtcaattgtctcttgtaaataggaccggagggagtata 10049819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 51698152 - 51698112
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  51698152 aaaagtcaactttctcttgtaaataggaccggagggagtat 51698112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 40214938 - 40214899
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagta 44  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  40214938 aaaagtcaactttctcttgtaaataggaccggagggagta 40214899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 6086939 - 6086897
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtatat 47  Q
    ||||||||| | ||||||||||||| |||||||||||||||||    
T  6086939 aaaagtcaactgtctcttgtaaataggaccggagggagtatat 6086897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 28406577 - 28406619
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtatat 47  Q
    ||||||||||| | ||||||||||| |||||||||||||||||    
T  28406577 aaaagtcaattgtttcttgtaaataggaccggagggagtatat 28406619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 29019845 - 29019887
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtatat 47  Q
    ||||||||||||||||||||||||| ||| | |||||||||||    
T  29019845 aaaagtcaattttctcttgtaaataggactgaagggagtatat 29019887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 14768136 - 14768095
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtata 46  Q
    |||||| |||| ||||||||||||| ||||||||||||||||    
T  14768136 aaaagtaaattgtctcttgtaaataggaccggagggagtata 14768095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 19202288 - 19202251
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggag 42  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  19202288 aaaagtcaactttctcttgtaaataggaccggagggag 19202251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 1122385 - 1122425
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||||||||||||||||||| ||||| || ||||||    
T  1122385 aaaagtcaattttctcttgtaaataggaccgaagtgagtat 1122425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 8243720 - 8243688
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccgga 37  Q
    ||||||||||| |||||||||||||||||||||    
T  8243720 aaaagtcaattgtctcttgtaaataagaccgga 8243688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 23825259 - 23825299
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| ||||||||||||||| || ||||||||||||    
T  23825259 aaaagtcaactttctcttgtaaatatgatcggagggagtat 23825299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 26999131 - 26999171
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| | ||||||||||||| |||||||||||||||    
T  26999131 aaaagtcaaatgtctcttgtaaataggaccggagggagtat 26999171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 28406505 - 28406465
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||||| | ||||||||||| |||||||||||||||    
T  28406505 aaaagtcaattgtttcttgtaaataggaccggagggagtat 28406465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 28945694 - 28945654
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    |||||| |||| ||||||||||||| |||||||||||||||    
T  28945694 aaaagtaaattgtctcttgtaaataggaccggagggagtat 28945654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2107 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold2107
Description:

Target: scaffold2107; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 553 - 593
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  553 aaaagtcaattttctcttgtaaataggaccggagggagtat 593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 23411275 - 23411315
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  23411275 aaaaatcaattttctcttgtaaataagaccggagggagtat 23411315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 2959277 - 2959234
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtatatt 48  Q
    ||||||||||||||||||||||||| |||||||||||| |||||    
T  2959277 aaaagtcaattttctcttgtaaataggaccggagggagcatatt 2959234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 2967746 - 2967703
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtatatt 48  Q
    ||||||||||||||||||||||||| |||||||||||| |||||    
T  2967746 aaaagtcaattttctcttgtaaataggaccggagggagcatatt 2967703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 904004 - 903962
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtatat 47  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  904004 aaaagtcaactttctcttgtaaataggaccggagggagtatat 903962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 26898301 - 26898341
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  26898301 aaaagtcaactttctcttgtaaataggaccggagggagtat 26898341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 36417085 - 36417045
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  36417085 aaaagtcaaatttctcttgtaaataggaccggagggagtat 36417045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 31802996 - 31802957
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagta 44  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  31802996 aaaagtcaactttctcttgtaaataggaccggagggagta 31802957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 9601631 - 9601589
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtatat 47  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||    
T  9601631 aaaagtcaactttctcttgtaaataggaccggaaggagtatat 9601589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 21090414 - 21090373
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtata 46  Q
    |||||| |||||||||||||||||| ||||||||||| ||||    
T  21090414 aaaagttaattttctcttgtaaataggaccggagggaatata 21090373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 3814081 - 3814121
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||||||| |||| |||| |||||||||||||||||    
T  3814081 aaaagtcaattttttcttataaacaagaccggagggagtat 3814121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 25027804 - 25027844
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| | ||||||||||||| |||||||||||||||    
T  25027804 aaaagtcaactgtctcttgtaaataggaccggagggagtat 25027844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 29374280 - 29374320
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| | ||||||||||||| |||||||||||||||    
T  29374280 aaaagtcaactgtctcttgtaaataggaccggagggagtat 29374320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 9548782 - 9548822
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  9548782 aaaagtcaattttctcttgtaaataggaccggagggagtat 9548822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 45536201 - 45536162
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagta 44  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  45536201 aaaagtcaattttctcttgtaaataaaaccggagggagta 45536162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 10065293 - 10065251
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtatat 47  Q
    |||| |||||||||||||||||||| |||||||||||||||||    
T  10065293 aaaaatcaattttctcttgtaaataggaccggagggagtatat 10065251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 28989384 - 28989421
Alignment:
Q  7 aagtcaattttctcttgtaaataagaccggagggagta 44  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  28989384 aagtcaactttctcttgtaaataagaccggagggagta 28989421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 2961142 - 2961102
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  2961142 aaaagtcaactttctcttgtaaataggaccggagggagtat 2961102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 1674009 - 1673966
Alignment:
Q  6 aaagtcaattttctcttgtaaataagaccggagggagtatatta 49  Q
    |||||||| ||||||||||||||| ||||| |||||||||||||    
T  1674009 aaagtcaactttctcttgtaaataggaccgaagggagtatatta 1673966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 10380428 - 10380389
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagta 44  Q
    ||||||||||||||||||||||||| ||||||||| ||||    
T  10380428 aaaagtcaattttctcttgtaaataggaccggaggaagta 10380389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 26545107 - 26545146
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagta 44  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  26545107 aaaagtcaactttctcttgtaaataagaccggaggaagta 26545146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 2352419 - 2352460
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtata 46  Q
    ||||||||| | ||||||||||||| ||||||||||||||||    
T  2352419 aaaagtcaactgtctcttgtaaataggaccggagggagtata 2352460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 15289883 - 15289915
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccgga 37  Q
    ||||||||| |||||||||||||||||||||||    
T  15289883 aaaagtcaactttctcttgtaaataagaccgga 15289915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 40161211 - 40161175
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggaggga 41  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  40161211 aaaagtcaattttctcttgtaaatatgaccgaaggga 40161175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 36064 - 36103
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagta 44  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  36064 aaaagtcaattttctcttgtaaataggaccggagggagta 36103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 35992 - 35952
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagtat 45  Q
    |||||| |||| ||||||||||||| |||||||||||||||    
T  35992 aaaagtaaattgtctcttgtaaataggaccggagggagtat 35952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 11140 - 11179
Alignment:
Q  5 aaaagtcaattttctcttgtaaataagaccggagggagta 44  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  11140 aaaagtcaactttctcttgtaaataggaccggagggagta 11179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University