View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2827_high_6 (Length: 412)
Name: NF2827_high_6
Description: NF2827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2827_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 12 - 397
Target Start/End: Complemental strand, 8532820 - 8532434
Alignment:
| Q |
12 |
aagaacaagttgtcaaagttcagaagaggtgattttgagtttgtaaaatttattttctagagttgaacattgtagtatatatgtctaattttagttttat |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8532820 |
aagaacaagttgtcaaagttcagaagaggtgattttgagtttgtaaaatttattttctagagttgaacattgtagtatatatgtctaattttagttttat |
8532721 |
T |
|
| Q |
112 |
ggcagggcctgagcttgcctgttgttcaaaatactacaaatgaaaattttattagatatgaaatttttgatgggactgacacacaagagagtattcaagt |
211 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8532720 |
ggcagggcctgagctcgcctgttgttcaaaatactacaaatgaaaattttattagatatgaaatttttgatgggactgacacacaagagagtattcaagt |
8532621 |
T |
|
| Q |
212 |
aagcaaaatttattactctcattcttcattacatgctgaacactagttatatatg-nnnnnnnnatgtttacatctatagcaggagcaaaactacatctt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
8532620 |
aagcaaaatttattactctcattcttcattacatgctgaacactagttatatatgtttttttttatgtttatatctatagcaggagcaaaactacatctt |
8532521 |
T |
|
| Q |
311 |
gagcagtgaaaatgtgaacactttagctccatttgatcgaaatgaagaacatagaagtgcaataaatcaggtttaaacataggatat |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8532520 |
gagcagtgaaaatgtgaacactttagctccatttgatcgaaatgaagaacatagcagtgcaataaatcaggtttaaacataggatat |
8532434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 20787058 - 20786971
Alignment:
| Q |
126 |
ttgcctgttgttcaaaatactacaaatgaaaattttattagatatgaaatttttgatgggactgacacacaagagagtattcaagtaa |
213 |
Q |
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| T |
20787058 |
ttgcatgtagttcaaaatactacaaatgaagagtttcttaggtatcaaatttttgatgggactgggacacaagacaatattcaagtaa |
20786971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 193 - 397
Target Start/End: Original strand, 3383091 - 3383294
Alignment:
| Q |
193 |
cacaagagagtattcaagtaagcaaaatttattactctcattcttcattacatgctgaacactagttatatatgnnnnnnnnatgtttacatctatagca |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
3383091 |
cacaagagagtattcaagtaagcaaaatttattactttcattcttcattacatgctgaacactagttatatatgttttttt-atgtttatatctatagca |
3383189 |
T |
|
| Q |
293 |
ggagcaaaactacatcttgagcagtgaaaatgtgaacactttagctccatttgatcgaaatgaagaacatagaagtgcaataaatcaggtttaaacatag |
392 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| ||||||||||||||||| |
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| T |
3383190 |
ggagcaaaactacatcttgagcggtgaaaatgtgaacactttagctccatttgatccaaatgaagaacatagcactgcaatagatcaggtttaaacatag |
3383289 |
T |
|
| Q |
393 |
gatat |
397 |
Q |
| |
|
||||| |
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|
| T |
3383290 |
gatat |
3383294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 42633198 - 42633111
Alignment:
| Q |
126 |
ttgcctgttgttcaaaatactacaaatgaaaattttattagatatgaaatttttgatgggactgacacacaagagagtattcaagtaa |
213 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| | ||| |||| ||| ||||| |||||||||||| |||||||| ||||||||||||| |
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| T |
42633198 |
ttgcatgtagttcaaaatactacaaatgaagagtttcttagctattaaattattgatgggactgggacacaagatagtattcaagtaa |
42633111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 57 - 188
Target Start/End: Original strand, 19397328 - 19397462
Alignment:
| Q |
57 |
aaatttattttctagagttgaacattgtagtatatatgtctaattttagtttt---atggcagggcctgagcttgcctgttgttcaaaatactacaaatg |
153 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||| ||||||||||||| |||||||| |||||| |||| |||||||||||| ||||||||| |
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|
| T |
19397328 |
aaatttattttctggagttgaacatagtagtatatatgtttaattttagttttttcatggcaggacctgagattgcatgttgttcaaaaaactacaaata |
19397427 |
T |
|
| Q |
154 |
aaaattttattagatatgaaatttttgatgggact |
188 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
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|
| T |
19397428 |
aaaattttcttagatatgaaatttttgatgggact |
19397462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 106 - 213
Target Start/End: Complemental strand, 15047627 - 15047520
Alignment:
| Q |
106 |
ttttatggcagggcctgagcttgcctgttgttcaaaatactacaaatgaaaattttattagatatgaaatttttgatgggactgacacacaagagagtat |
205 |
Q |
| |
|
||||||| ||||| || || |||| ||| ||||||||||||||||||||| | ||| |||| ||| |||||||||||||||||| |||||||| | ||| |
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| T |
15047627 |
ttttatgacagggactaagattgcatgtagttcaaaatactacaaatgaagagtttcttaggtatcaaatttttgatgggactgggacacaagacaatat |
15047528 |
T |
|
| Q |
206 |
tcaagtaa |
213 |
Q |
| |
|
|||||||| |
|
|
| T |
15047527 |
tcaagtaa |
15047520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 38176807 - 38176720
Alignment:
| Q |
126 |
ttgcctgttgttcaaaatactacaaatgaaaattttattagatatgaaatttttgatgggactgacacacaagagagtattcaagtaa |
213 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| | |||||||| ||| ||||| |||||||||||| |||||||| | |||||| |||| |
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|
| T |
38176807 |
ttgcatgtagttcaaaatactacaaatgaagagtttattaggtatcaaattattgatgggactgggacacaagacaatattcatgtaa |
38176720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 26305183 - 26305220
Alignment:
| Q |
30 |
ttcagaagaggtgattttgagtttgtaaaatttatttt |
67 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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|
| T |
26305183 |
ttcagaagaggtgattttgagtttgtaaaatttatttt |
26305220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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