View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2827_low_10 (Length: 405)
Name: NF2827_low_10
Description: NF2827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2827_low_10 |
 | |
|
| [»] scaffold1337 (1 HSPs) |
| | |
|
| [»] scaffold0067 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 30578327 - 30578575
Alignment:
| Q |
1 |
agaaggaaacatgcctacaggtcatggtttacgatcccgcaccagagattcattctctcgtcccttccgcaagaagggaacaatagccttagccacctac |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30578327 |
agaaggaaacatgcctgcaggtcatggtttacgatcccgcaccagagattcattctctcgtcccttccgcaagaagggaacaatagccttagccacctac |
30578426 |
T |
|
| Q |
101 |
ctcaggacctatcatatcggcgactatgtcgatattagagttaacggagctgtgcacaaaggtatgccgcacaaattctacca-ggtcgtaccagtcgtg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
30578427 |
ctcaggacctatcatatcggcgactatgtcgatattagagttaacggagctgtgcacaaaggtatgccgcacaaattctaccacggtcgtaccggtcgtg |
30578526 |
T |
|
| Q |
200 |
tctgcaatgtgactaagcgggtcattggtgttgaagtcaataagcaagt |
248 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
30578527 |
tctggaatgtgactaagcgtgccattggtgttgaagtcaataagcaagt |
30578575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 247 - 386
Target Start/End: Original strand, 30579508 - 30579647
Alignment:
| Q |
247 |
gttaggaacaagatattgaggaagaggattcatgtccgagtggagcatgttatgccatcaaggtgcactgaggagttcaggttgaggaagatcaagaatg |
346 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30579508 |
gttaggaacaagatattgaggaagaggatccatgtccgagtggagcatgttatgccatcaaggtgcactgaggagttcagattgaggaagatcaagaatg |
30579607 |
T |
|
| Q |
347 |
atcaattgaaggctgaggctaaggccaagggagaggtgat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30579608 |
atcaattgaaggctgaggctaaggccaagggagaggtgat |
30579647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 21257183 - 21257252
Alignment:
| Q |
47 |
gattcattctctcgtcccttccgcaagaagggaacaatagccttagccacctacctcaggacctatcatat |
117 |
Q |
| |
|
||||| |||||| |||| |||| |||||| |||||||||||| |||| || |||||||||| ||||||||| |
|
|
| T |
21257183 |
gattcgttctcttgtccattccccaagaaaggaacaatagccctagctacatacctcagga-ctatcatat |
21257252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 250 - 377
Target Start/End: Original strand, 43829255 - 43829382
Alignment:
| Q |
250 |
aggaacaagatattgaggaagaggattcatgtccgagtggagcatgttatgccatcaaggtgcactgaggagttcaggttgaggaagatcaagaatgatc |
349 |
Q |
| |
|
||||||||||| | |||||||| || || || |||||||||||||||||||| || |||||||||||||||||| | ||||||||||| |||||||||| |
|
|
| T |
43829255 |
aggaacaagattctcaggaagagaatccacgttcgagtggagcatgttatgccttctaggtgcactgaggagttccgtttgaggaagattaagaatgatc |
43829354 |
T |
|
| Q |
350 |
aattgaaggctgaggctaaggccaaggg |
377 |
Q |
| |
|
|| | ||||||||||||||||| ||||| |
|
|
| T |
43829355 |
aacttaaggctgaggctaaggcaaaggg |
43829382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 43828380 - 43828552
Alignment:
| Q |
20 |
ggtcatggtttacgatcccgcaccagagattcattctctcgtcccttccgcaagaagggaacaatagccttagccacctacctcaggacctatcatatcg |
119 |
Q |
| |
|
||||||||||| |||| || || ||||| || ||||||||||| ||| | |||||||| ||||| ||| | ||||| |||||||| |||||||| |||| |
|
|
| T |
43828380 |
ggtcatggtttgagatctcgtacgagagactctttctctcgtccattcaggaagaagggtacaatcgcccttgccacttacctcagaacctatcacatcg |
43828479 |
T |
|
| Q |
120 |
gcgactatgtcgatattagagttaacggagctgtgcacaaaggtatgccgcacaaattctacca-ggtcgtac |
191 |
Q |
| |
|
|||| ||||| ||| | || |||||||| ||||| ||||| |||||||| || || |||||||| |||||||| |
|
|
| T |
43828480 |
gcgattatgttgatgtcagggttaacggtgctgtacacaagggtatgcctcataagttctaccacggtcgtac |
43828552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1337 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1337
Description:
Target: scaffold1337; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 639 - 688
Alignment:
| Q |
98 |
tacctcaggacctatcatatcggcgactatgtcgatattagagttaacgg |
147 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
639 |
tacctcagaacttatcatatcggtgactatgtcgatattaggattaacgg |
688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 18359 - 18310
Alignment:
| Q |
98 |
tacctcaggacctatcatatcggcgactatgtcgatattagagttaacgg |
147 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
18359 |
tacctcagaacttatcatatcggtgactatgtcgatattaggattaacgg |
18310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University