View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2827_low_11 (Length: 394)
Name: NF2827_low_11
Description: NF2827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2827_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 11 - 376
Target Start/End: Original strand, 36601107 - 36601471
Alignment:
| Q |
11 |
cacagacgcaaaagcagccatgtagcagttatcattttttaactgatagtaactgataagaaatccaaaatttcattgaaaaacctcaacttttgacatg |
110 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36601107 |
cacaaacgcaaaagcggccatgtagcagttatcattttttaactgatagtaactgataagaaatccaaaatttcattgaaaaacctcaacttttgacatg |
36601206 |
T |
|
| Q |
111 |
atcacagagatacttacggcataatgtggatagatagatgatatgtaaaacagcagtgtgctataacccaatcaaagacaggacatgctacacaaacatc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36601207 |
atcacagagatacttacggcataatgtggatagatagatgatatgtaaaacagcagtgtgctataacccaatcaaagacaggacatgctacacaaacatc |
36601306 |
T |
|
| Q |
211 |
atgtttgacaactgccattctaaacagccggtatgtggtttgttttcaaatgatggcttttattagggcatcgaagaactttatattctagcttgtgaat |
310 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36601307 |
atgtttgacaactgccgttctaaacagccggtatgtggtttgttttcaaatgatggcttttatta-ggcatcgaagaactttatattctagcttgtgaat |
36601405 |
T |
|
| Q |
311 |
tgttagcacagactataggtaaaattcattattaacagcagaataagattccgctaaaggcatatt |
376 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
36601406 |
tgttagcaaggactataggtaaaattcattattaacagcagaataagattcccctaaaagcatatt |
36601471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University