View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2827_low_13 (Length: 375)
Name: NF2827_low_13
Description: NF2827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2827_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 32680057 - 32680416
Alignment:
| Q |
1 |
aaaaagcacagagggctacaataaaaagtcttaatattttggtataaattcccttgattgagaagctttcaaaacctatgttgtcaatcgtggatcgagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32680057 |
aaaaagcacagagggctacaataaaaagtcttaatattttggtataaattcccttgattgagaagctttcaaaacctatgttgtcaatcgtggatcgagg |
32680156 |
T |
|
| Q |
101 |
aaaactctgattgactcatttgtctcttattaaaaggatcagagggagtatctgacaatgtaaaccaaagcactacaaagacagacaaattagttttcaa |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32680157 |
aaaactctgattgactcatttgtctcctattaaaaggattagagggagtatctgacaatgtaaaccaaagcactacaaagacagacaaattagttttcaa |
32680256 |
T |
|
| Q |
201 |
ttttcaccttgttcggtaataaggatttctcttcagctgccctttcaagtgcagttgtcgctgaactgagtagagaattaagaaagctcaacgaaggttg |
300 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32680257 |
ttttcaccttgttcagtaataaggatttctcttcagctgccctttcaagtgcagttgtcgctgaactgagtagagaattaagaaagcacaacgaaggttg |
32680356 |
T |
|
| Q |
301 |
ttgaaattcaacggaagtagggtaactgggggaggcatcagaagactgagattacatttt |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32680357 |
ttgaaattcaacggaagtagggtaactgggggaggcatcagaagactgagattacatttt |
32680416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 149 - 352
Target Start/End: Original strand, 40116880 - 40117083
Alignment:
| Q |
149 |
tatctgacaatgtaaaccaaagcactacaaagacagacaaattagttttcaattttcaccttgttcggtaataaggatttctcttcagctgccctttcaa |
248 |
Q |
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|||| |||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||| |||||||||||||||| || ||||| ||||| | |
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| T |
40116880 |
tatcagacaatgtaaaccaaagcactagaaagacgaacaaatcagttttcaattttcaccttgttcagtaataaggatttctcctcggctgctctttcca |
40116979 |
T |
|
| Q |
249 |
gtgcagttgtcgctgaactgagtagagaattaagaaagctcaacgaaggttgttgaaattcaacggaagtagggtaactgggggaggcatcagaagactg |
348 |
Q |
| |
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|||||||||| ||||||||||||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| ||||||||| |||||||| |
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| T |
40116980 |
gtgcagttgtagctgaactgagtaaagaattaagcaagctcaatgaaggttgttgaaattcaacagaagtagggtaactggaggaggcatcggaagactg |
40117079 |
T |
|
| Q |
349 |
agat |
352 |
Q |
| |
|
|||| |
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|
| T |
40117080 |
agat |
40117083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 44806454 - 44806374
Alignment:
| Q |
15 |
gctacaataaaaagtcttaatattttggtataaattcccttgattgagaagctttcaaaacctatgttgtcaatcgtggat |
95 |
Q |
| |
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||||||| |||||||||||| ||| |||||||||||||| ||| |||||||||||||||||||||||||||| |||||| |
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| T |
44806454 |
gctacaaggaaaagtcttaatgatttcgtataaattcccttaattcagaagctttcaaaacctatgttgtcaatagtggat |
44806374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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