View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2827_low_17 (Length: 322)
Name: NF2827_low_17
Description: NF2827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2827_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 54791379 - 54791084
Alignment:
| Q |
20 |
ctactacagcctgattgtcaccatccatgaagaatacatggacatccaatggtctgtacttggcaaattcctttagccagtatccagcatcgttaaagtt |
119 |
Q |
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| T |
54791379 |
ctactacagcctgagtgtcaccatccatgaagaatacatggacatccaatggtctgtacttggcaaattcctttagccagtatccagaatcgttaaagtt |
54791280 |
T |
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| Q |
120 |
gctcttaatgttaacgattatgcctgtccatggccagacataattctcaacctgcggtgcaggttggttgacagcttcggccaaagccgggggaggtatt |
219 |
Q |
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| T |
54791279 |
gctcttaatgttaacgattatgcctgtccatggccagacataattctcaacctgcggtacaggttggttgacagcttcggccaaagccgggggaggtatt |
54791180 |
T |
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| Q |
220 |
tggtctgcttcatttactaggtcagtctccaaatactttgccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgctt |
315 |
Q |
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| T |
54791179 |
tggtctgcttcatttactaggtcggtctccaaatactttgccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgctt |
54791084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 315
Target Start/End: Original strand, 54777767 - 54778061
Alignment:
| Q |
20 |
ctactacagcctgattgtcaccatccatgaagaatacatggacatccaatggtctgtacttggcaaattcctttagccagtatccagcatcgttaaagtt |
119 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
54777767 |
ctactacagcctgagtgtcaccatccatgaagaatacatggacatccaatggtctgtacttggcaaattcctttagccagtatccagaatcgttaaggtt |
54777866 |
T |
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| Q |
120 |
gctcttaatgttaacgattatgcctgtccatggccagacataattctcaacctgcggtgcaggttggttgacagcttcggccaaagccgggggaggtatt |
219 |
Q |
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| T |
54777867 |
gctcttaatgttaacgattatacctgtccatggcca-acataattctcaacctgcggtacaggttggttgacagcttcggccaaagccgggggaggtatt |
54777965 |
T |
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| Q |
220 |
tggtctgcttcatttactaggtcagtctccaaatactttgccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgctt |
315 |
Q |
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| T |
54777966 |
tggtctgcttcatttactaggtcggtctccaaatactttgccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgctt |
54778061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 52284037 - 52283742
Alignment:
| Q |
20 |
ctactacagcctgattgtcaccatccatgaagaatacatggacatccaatggtctgtacttggcaaattcctttagccagtatccagcatcgttaaagtt |
119 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | || |
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| T |
52284037 |
ctactacagcctgagtgtcaccatccatgaagaatacatggacatccaatggtctgtacttggcaaattcctttagccagtatccagaatcattcagttt |
52283938 |
T |
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| Q |
120 |
gctcttaatgttaacgattatgcctgtccatggccagacataattctcaacctgcggtgcaggttggttgacagcttcggccaaagccgggggaggtatt |
219 |
Q |
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| T |
52283937 |
gctcttaatattaacaattatgcctgtccatggccagacatagttctcaacctgtggtgcaggttggttgacagcttcggtcaaaggcgggggaggtatt |
52283838 |
T |
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| Q |
220 |
tggtctgcttcatttactaggtcagtctccaaatactttgccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgctt |
315 |
Q |
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| T |
52283837 |
tggtctgcttcatttgctaggtcagtctccaaaaactttgccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgctt |
52283742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 201 - 313
Target Start/End: Complemental strand, 799132 - 799020
Alignment:
| Q |
201 |
caaagccgggggaggtatttggtctgcttcatttactaggtcagtctccaaatactttgccagagcgaggtggtttgccttttgtttggcgtttctgttt |
300 |
Q |
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|||||||||| |||||| |||||||||||||||| ||| ||||||| |||| ||||||||||||| ||||||||||| ||||| || | | |||||||| |
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| T |
799132 |
caaagccgggcgaggtacttggtctgcttcatttgctaagtcagtcctcaaaaactttgccagagccaggtggtttgctttttgctttgtgcttctgttt |
799033 |
T |
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| Q |
301 |
gctgaacctttgc |
313 |
Q |
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|| |||||||||| |
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| T |
799032 |
gccgaacctttgc |
799020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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