View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2827_low_19 (Length: 300)
Name: NF2827_low_19
Description: NF2827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2827_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 38924517 - 38924248
Alignment:
| Q |
16 |
ctcacaacaactcttgaccaaatttgtgttgtttcatgtagtcccaaaagaaatatcattctacttatgaagcttctttcaagaccaaaactactagaac |
115 |
Q |
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| T |
38924517 |
ctcacaacaactcttgaccaaatttgtgttgtttcatgtagtcccaaaagaaatatcattctacttatgaagcttctttcaacaccaaaactactagaac |
38924418 |
T |
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| Q |
116 |
catcatcaaaaacgtcgttgtcagagtcgaaaactccagctgcaatgcttgcttcaattcctaaaccaacgcatatttgaaaagtgaaaagaagaatcca |
215 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38924417 |
catcatcaaaaacatcgttgtcggagtcgaaaactccagctgcaatgcttgcttcaattcctaaaccaacacatatttgaaaagtgaaaagaagaatcca |
38924318 |
T |
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| Q |
216 |
tttccatgacatgtaaagacgagtttggagaagaatagaattggatgaatcattcataaggttgattttt |
285 |
Q |
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| T |
38924317 |
tttccatgacatgtaaagacgagtttggagaagaatagaattggatgaatcattcataaggttgattttt |
38924248 |
T |
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