View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2827_low_2 (Length: 598)

Name: NF2827_low_2
Description: NF2827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2827_low_2
NF2827_low_2
[»] chr7 (8 HSPs)
chr7 (8-582)||(42852614-42853188)
chr7 (253-411)||(42848198-42848352)
chr7 (162-484)||(42854664-42854979)
chr7 (236-355)||(42856378-42856497)
chr7 (236-355)||(42860445-42860564)
chr7 (49-111)||(42854041-42854103)
chr7 (15-111)||(42860281-42860383)
chr7 (115-159)||(42848006-42848050)
[»] chr4 (1 HSPs)
chr4 (426-489)||(27148-27211)
[»] chr3 (1 HSPs)
chr3 (49-101)||(21765105-21765157)


Alignment Details
Target: chr7 (Bit Score: 516; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 8 - 582
Target Start/End: Original strand, 42852614 - 42853188
Alignment:
Q  8 cagcacagatgccatctttaggcggatcagcaattaatacggaatttcttagagcacgcgcacttatccgagataggatgtaagttactatttgtttgtt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42852614 cagcacagatgccatctttaggcggatcagcaattaatacggaatttcttagagcacgcacacttatccgagataggatgtaagttactatttgtttgtt 42852713  T
Q  108 taacttgtcaataggtgtaatatttggagattgatattttcttgaaactaacaaatataaccatttaatcgttttaaatttattactcagattgtgatta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  42852714 taacttgtcaataggtgtaatatttggagattgatattttcttgaaactaacaaatataaccatttaatcgttttaatttttttactcagattgtgatta 42852813  T
Q  208 tatgtagtgtttatagttggtatttttgcgacttgcttgacgacattgaggcgcatttctttttctgctgctgtatagttattgcttatctttgaacttg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  42852814 tatgtagtgtttatagttggtatttttgcgacttgcttgacgacattgagacacatttctttttctgctgctgtatagttattgcttatctttgaacttg 42852913  T
Q  308 gcaagccattctatcaaagttattgatttggattactacagtacatatgtcattaattaagtcgattagattaatctctgtctatgtgtgttccacatgc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42852914 gcaagccattctatcaaagttattgatttggattactacagtacatatgtcatgaattaagtcgattagattaatctctgtctatgtgtgttccacatgc 42853013  T
Q  408 tttggnnnnnnnnnacgaagatacgatataatatgtgcataagatatatcacagtattctttttcattcttgtcgattttacttgacagcaataacattt 507  Q
    |||||         ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  42853014 tttggtttttttttacgaagatacgatataatatgtgcataagatatatcacgttattctttttcattcttgtcgattttacttgacagcaataacattt 42853113  T
Q  508 taccttccagctatgagatgttattgcaacggcatgcaataccagttagtgaaatgcagaaaaggaggatcaagg 582  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42853114 taccttccagctatgagatgttattgcaacggcatgcaataccagttagtgaaatgcagaaaaggaggatcaagg 42853188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 253 - 411
Target Start/End: Original strand, 42848198 - 42848352
Alignment:
Q  253 ttgaggcgcatttctttttctgctgctgtatagttattgcttatctttgaacttggcaagccattctatcaaagttattgatttggattactacagtaca 352  Q
    ||||||| ||||||||| ||| | ||| ||||||||||||||| ||| ||||||   | |||||||||||||||||||||||| |||| ||| ||||| |    
T  42848198 ttgaggcacatttctttgtcttccgctatatagttattgcttaacttagaacttatgaggccattctatcaaagttattgattaggatcactgcagtata 42848297  T
Q  353 tatgtcattaattaagtcgattagattaatctctgtctatgtgtgttccacatgctttg 411  Q
    ||||||     ||||||| ||||||||| |||||||||| | ||||||||| |||||||    
T  42848298 tatgtc----cttaagtcaattagattactctctgtctacgggtgttccacctgctttg 42848352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 162 - 484
Target Start/End: Original strand, 42854664 - 42854979
Alignment:
Q  162 atataaccatttaatcgttttaaatttattactcagattgtgattatatgtagtgtttatagttggtatttttgcgacttgcttgacgacattgaggcgc 261  Q
    ||||||||||||| ||| ||||||||| ||| ||||||||| |  | |||||||||| || |  |   | |||| |||||||||||| |||||||||  |    
T  42854664 atataaccatttattcggtttaaattttttattcagattgtaaaaa-atgtagtgttcattgcagtggtatttgtgacttgcttgacaacattgaggtcc 42854762  T
Q  262 atttctttttctgctgctgtatagttattgcttatctttgaacttggcaagccattctatcaaagttattgatttggattactacagtacatatgtcatt 361  Q
     |||||   ||| | ||| ||||| ||||||||| ||| |||||||  | |||||||||||||||||||||||| |||| ||| ||||| |||||||       
T  42854763 gtttctgcatcttccgctatatagatattgcttaacttagaacttgtgaggccattctatcaaagttattgattaggatcactgcagtatatatgtc--- 42854859  T
Q  362 aattaagtcgattagattaatctctgtctatgtgtgttccacatgctttggnnnnnnnnnacgaagatacgatataatatgtgcataagatatatcacag 461  Q
      ||||||| ||||||||| |||||||| |||  ||||| || ||| || |         ||  |||||| ||||||||||||||||||||||||||  |    
T  42854860 -cttaagtcaattagattactctctgtcaatggatgttcgacctgcctttg--ttttttgactcagatacaatataatatgtgcataagatatatcatgg 42854956  T
Q  462 tattctttttcattcttgtcgat 484  Q
    |||||||| ||||||||||||||    
T  42854957 tattctttctcattcttgtcgat 42854979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 236 - 355
Target Start/End: Original strand, 42856378 - 42856497
Alignment:
Q  236 cgacttgcttgacgacattgaggcgcatttctttttctgctgctgtatagttattgcttatctttgaacttggcaagccattctatcaaagttattgatt 335  Q
    ||||||||||||| |||||||| | ||||||||| ||| | ||| ||||||||||||||| |||||||||||  | |||||||| |||||||||||||||    
T  42856378 cgacttgcttgacaacattgagacacatttctttgtcttcagctatatagttattgcttaactttgaacttgcaaggccattctgtcaaagttattgatt 42856477  T
Q  336 tggattactacagtacatat 355  Q
     |||| ||| ||||| ||||    
T  42856478 aggatcactgcagtatatat 42856497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 236 - 355
Target Start/End: Original strand, 42860445 - 42860564
Alignment:
Q  236 cgacttgcttgacgacattgaggcgcatttctttttctgctgctgtatagttattgcttatctttgaacttggcaagccattctatcaaagttattgatt 335  Q
    ||||||||||||| |||||||| | ||||||||| ||| | ||| ||||||||||||||| |||||||||||  | |||||||| |||||||||||||||    
T  42860445 cgacttgcttgacaacattgagacacatttctttgtcttcagctatatagttattgcttaactttgaacttgcaaggccattctgtcaaagttattgatt 42860544  T
Q  336 tggattactacagtacatat 355  Q
     |||| ||| ||||| ||||    
T  42860545 aggatcactgcagtatatat 42860564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 42854041 - 42854103
Alignment:
Q  49 gaatttcttagagcacgcgcacttatccgagataggatgtaagttactatttgtttgtttaac 111  Q
    |||||||||||||||||| || |||| | ||| |||||||||||||| |||||||||||||||    
T  42854041 gaatttcttagagcacgctcatttattcaagagaggatgtaagttaccatttgtttgtttaac 42854103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 42860281 - 42860383
Alignment:
Q  15 gatgccatctttaggcggatcagcaattaatacgga------atttcttagagcacgcgcacttatccgagataggatgtaagttactatttgtttgttt 108  Q
    |||||||||||||||||||||| | ||||| | |||      |||||||||||||| | || |||| | ||| |||||||||||| ||||||||||||||    
T  42860281 gatgccatctttaggcggatcaacgattaacatggaccaagaatttcttagagcacactcatttattcaagagaggatgtaagttgctatttgtttgttt 42860380  T
Q  109 aac 111  Q
    |||    
T  42860381 aac 42860383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 42848006 - 42848050
Alignment:
Q  115 tcaataggtgtaatatttggagattgatattttcttgaaactaac 159  Q
    ||||||||||||||| ||| | ||| |||||||||||||||||||    
T  42848006 tcaataggtgtaatacttgaaaattcatattttcttgaaactaac 42848050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 489
Target Start/End: Original strand, 27148 - 27211
Alignment:
Q  426 agatacgatataatatgtgcataagatatatcacagtattctttttcattcttgtcgattttac 489  Q
    |||||| || ||||||||||||||||||||||   |||||||||||||||||||| ||||||||    
T  27148 agatacaatgtaatatgtgcataagatatatcgtggtattctttttcattcttgttgattttac 27211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 21765105 - 21765157
Alignment:
Q  49 gaatttcttagagcacgcgcacttatccgagataggatgtaagttactatttg 101  Q
    ||||||||||| ||||||||| || | |||||| |||||||||||||||||||    
T  21765105 gaatttcttagggcacgcgcagttgtacgagatgggatgtaagttactatttg 21765157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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