View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2827_low_20 (Length: 294)
Name: NF2827_low_20
Description: NF2827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2827_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 27514081 - 27513835
Alignment:
| Q |
18 |
ctaattggctttcggtgggaagaggaaccgcagaaaaaaccagaacagagacggaaaccgaaatgaaggaactgctctgtccttcgatgagtaagaacaa |
117 |
Q |
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| T |
27514081 |
ctaattggctttcggtgggaagaggaaccgcagaaaaaaccagaaaggagacgaagaccagaatgaaggaaccgctccgtcctccgatgagtaagaacaa |
27513982 |
T |
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| Q |
118 |
agaaaaacgatctgaaattcatgctaaactcttcaaaagaagttttagaaacgtgctaagtcgaaagctcgcgatgctgttattgaaagagctatcgagc |
217 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
27513981 |
agaaaaacgatctgaaattcatgctaaactcgtcagaagaagttttagaaacatgctaagtcgaaagctcacgatgctactattgaaagagctatcgagc |
27513882 |
T |
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| Q |
218 |
tcggtgaagaggttcactctctctcactggatggctgttgttgttttga |
266 |
Q |
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| T |
27513881 |
tcggtgaagaggtt--ctctctctcactgaatggctgttgttgttttga |
27513835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 242
Target Start/End: Original strand, 8674890 - 8675040
Alignment:
| Q |
96 |
gtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcga |
191 |
Q |
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| T |
8674890 |
gtccttcaatgattaagaacaaagaaaaacgatctgaaattcatgctaaactcaagcatcagaagaagcttgaaaaacgcgctaagtctaatgctcgtga |
8674989 |
T |
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| Q |
192 |
tgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctc |
242 |
Q |
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| T |
8674990 |
tgctgctgttaaaagagctatcgagctcggtgaagaggttcactctctctc |
8675040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 39209785 - 39209911
Alignment:
| Q |
18 |
ctaattggctttcggtgggaagaggaaccgcagaaaaaaccagaacagagacggaaaccgaaatgaaggaactgctctgtccttcgatgagtaagaacaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39209785 |
ctaattggctttcggtgggaagaggaaccgcagaaaaaaccagaacagtgacggaaaccgaaatgaaggaactgctccgtccttcgatgagtaagaacaa |
39209884 |
T |
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| Q |
118 |
agaaaaacgatctgaaattcatgctaa |
144 |
Q |
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| T |
39209885 |
agaaaaacgatctgaaattcatgctaa |
39209911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 39209906 - 39210001
Alignment:
| Q |
171 |
tgctaagtcgaaagctcgcgatgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctcactggatggctgttgttgttttga |
266 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
39209906 |
tgctaagtcgaaagctcgcgatgctgctattgaaagagctatcgagctcggtgaagaggttcactctctctcactgaatggatgttgttgttttga |
39210001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 99 - 242
Target Start/End: Complemental strand, 24037194 - 24037047
Alignment:
| Q |
99 |
cttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcgatgc |
194 |
Q |
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||||||||| |||||| |||| |||||||||||||||||||||||||||| ||| |||||| || |||||| |||||||||||||||||||||| |
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| T |
24037194 |
cttcgatgattaagaaaaaaggaaaacgatctgaaattcatgctaaactcaagcgtcagaagaagcttgagaaacacgctaagtcgaaagctcgcgatgt |
24037095 |
T |
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| Q |
195 |
tgttattgaaagagctatcgagctcggtgaagaggttcactctctctc |
242 |
Q |
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|| | || |||| ||||||||| ||||||||||||||| ||||||||| |
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| T |
24037094 |
tgctgttaaaagcgctatcgagatcggtgaagaggttcgctctctctc |
24037047 |
T |
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