View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2827_low_23 (Length: 259)
Name: NF2827_low_23
Description: NF2827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2827_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 2564200 - 2563973
Alignment:
| Q |
19 |
aagtccttcttcccaccatagaattcctagtaaaattattgagttaattctttctttggaacta---atgtttagtaaaagatcattagtttgttatatg |
115 |
Q |
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| T |
2564200 |
aagtccttcttcccaccatagaattcctagtaaaattattgagttaattctttctttggaactactaatgtttagtaaaagatcattagtttgttatatg |
2564101 |
T |
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| Q |
116 |
tatctgtaaatataaagacctgtgttagtaatgtttgaactccaacaaatttgttatcccagctgaactcagacgctgcctgattccaaccttggttatc |
215 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2564100 |
tatgtgtaaatataaagacctgtgttagtaatgtttgaactccaacaaatttgttatcccagctgaactcagacgctgcctgattccaaccttggttatc |
2564001 |
T |
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| Q |
216 |
tgtgatgtacttcaagtatttgctttct |
243 |
Q |
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| T |
2564000 |
tgtgatgtacttcaagtacttgctttct |
2563973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 122 - 242
Target Start/End: Complemental strand, 2573944 - 2573824
Alignment:
| Q |
122 |
taaatataaagacctgtgttagtaatgtttgaactccaacaaatttgttatcccagctgaactcagacgctgcctgattccaaccttggttatctgtgat |
221 |
Q |
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||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| |||| ||| |||||||||||||| |||||| |
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| T |
2573944 |
taaatatgaatacctgtgttagtaatgtttgagctccaacaaatttgttatcccagctaaattcagacactgcttgactccaaccttggttacttgtgat |
2573845 |
T |
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| Q |
222 |
gtacttcaagtatttgctttc |
242 |
Q |
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|||| |||||||||||||||| |
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| T |
2573844 |
gtacgtcaagtatttgctttc |
2573824 |
T |
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