View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2827_low_28 (Length: 221)
Name: NF2827_low_28
Description: NF2827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2827_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 31948484 - 31948682
Alignment:
| Q |
22 |
gaatatatttaacgctggtggtgtacgtgctcatgcaatcgagattttaccagggataactaaaattgtgattaagagaatcgatggtggtgatgttgcg |
121 |
Q |
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| T |
31948484 |
gaatatatttaacgctggtggtgtacgtgctcatgcaatcgagattttaccagggataactaaaattgtgattaagagaatcgatggtggtgatgttgcg |
31948583 |
T |
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| Q |
122 |
gtggttggtcagcaggagagaaggtcttctcttggtgttgatttgtggaggtttcgacttcctccgtggacgcagccagagagggtgacggcagtttgt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31948584 |
gtggttggtcagcaggagagaaggtcttctcttggtgttgatttgtggaggtttcgacttcctccgtggacgcagccagagagggtgacggcggtttgt |
31948682 |
T |
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