View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2827_low_3 (Length: 571)

Name: NF2827_low_3
Description: NF2827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2827_low_3
NF2827_low_3
[»] scaffold0862 (1 HSPs)
scaffold0862 (19-565)||(115-664)
[»] chr8 (5 HSPs)
chr8 (19-262)||(7275143-7275389)
chr8 (94-262)||(7277748-7277919)
chr8 (95-262)||(13856639-13856810)
chr8 (23-106)||(26175317-26175400)
chr8 (116-230)||(3567522-3567639)
[»] chr7 (9 HSPs)
chr7 (19-262)||(41832499-41832745)
chr7 (94-262)||(41830168-41830339)
chr7 (94-261)||(8083389-8083559)
chr7 (20-104)||(34512721-34512805)
chr7 (31-112)||(7737214-7737295)
chr7 (54-122)||(23612241-23612309)
chr7 (107-215)||(25432047-25432155)
chr7 (184-232)||(23613779-23613827)
chr7 (127-225)||(23613667-23613766)
[»] chr5 (12 HSPs)
chr5 (26-261)||(21256520-21256758)
chr5 (94-262)||(21254116-21254287)
chr5 (94-262)||(26873160-26873331)
chr5 (94-232)||(31339170-31339309)
chr5 (37-106)||(35304832-35304901)
chr5 (19-106)||(43233727-43233814)
chr5 (31-105)||(41949496-41949570)
chr5 (180-260)||(4730657-4730741)
chr5 (45-156)||(15543761-15543873)
chr5 (117-190)||(15531461-15531535)
chr5 (117-175)||(15531586-15531644)
chr5 (52-167)||(17823477-17823594)
[»] chr2 (6 HSPs)
chr2 (26-261)||(24039358-24039596)
chr2 (26-264)||(31269460-31269700)
chr2 (94-262)||(24038231-24038402)
chr2 (93-261)||(31180185-31180355)
chr2 (35-106)||(36316443-36316515)
chr2 (116-219)||(36402728-36402832)
[»] scaffold0525 (1 HSPs)
scaffold0525 (27-261)||(2028-2266)
[»] chr1 (5 HSPs)
chr1 (94-262)||(18705707-18705878)
chr1 (31-112)||(9905943-9906024)
chr1 (94-167)||(12436186-12436259)
chr1 (102-167)||(35267574-35267639)
chr1 (385-438)||(28249026-28249079)
[»] chr6 (8 HSPs)
chr6 (94-261)||(30689634-30689804)
chr6 (94-262)||(8655826-8655991)
chr6 (20-104)||(6823176-6823261)
chr6 (31-106)||(14618884-14618959)
chr6 (175-262)||(6825507-6825597)
chr6 (184-262)||(24249778-24249859)
chr6 (71-106)||(29427297-29427332)
chr6 (175-224)||(6823075-6823124)
[»] chr4 (7 HSPs)
chr4 (92-261)||(2546986-2547158)
chr4 (29-261)||(5444623-5444859)
chr4 (126-172)||(20880131-20880177)
chr4 (52-107)||(11815067-11815122)
chr4 (184-261)||(35783779-35783859)
chr4 (94-167)||(20879962-20880035)
chr4 (184-232)||(4174760-4174808)
[»] scaffold0023 (1 HSPs)
scaffold0023 (94-261)||(111544-111714)
[»] scaffold0251 (1 HSPs)
scaffold0251 (94-230)||(4583-4719)
[»] scaffold0655 (1 HSPs)
scaffold0655 (52-216)||(570-734)
[»] chr3 (12 HSPs)
chr3 (52-171)||(8504296-8504417)
chr3 (94-261)||(10018777-10018948)
chr3 (94-261)||(10256091-10256262)
chr3 (27-106)||(4607338-4607417)
chr3 (94-261)||(10179974-10180145)
chr3 (31-106)||(42656345-42656420)
chr3 (128-261)||(10123317-10123454)
chr3 (150-261)||(10661756-10661871)
chr3 (150-261)||(782838-782954)
chr3 (150-232)||(10511058-10511141)
chr3 (186-261)||(10514351-10514429)
chr3 (94-232)||(19954483-19954622)
[»] scaffold0001 (3 HSPs)
scaffold0001 (20-104)||(144802-144887)
scaffold0001 (175-261)||(144661-144750)
scaffold0001 (175-262)||(146719-146809)
[»] scaffold0263 (1 HSPs)
scaffold0263 (31-106)||(22825-22900)


Alignment Details
Target: scaffold0862 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 19 - 565
Target Start/End: Original strand, 115 - 664
Alignment:
Q  19 atttccggcatctttccttgtattttttcatttcaagttggaagtgttttgtacaccttccaacttgagggggactattagagatatagattagtagcat 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  115 atttccggcatctttccttgtattttctcatttcaagttggaagtgttttgaacacctttcaacttgagggggactattagagatatagattagtagcat 214  T
Q  119 attaatcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccattttcatcaatagaaagagtt 218  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  215 attagtcctagtagagaatagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccattttcatcaatagaaagagtt 314  T
Q  219 tcttagttttctct---ttctttcatggatgccatatttcctaacataagtcactcccaattgttcatccacaagtttatttcctccttcttcatttata 315  Q
    ||||||||||||||   | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  315 tcttagttttctctccttcctttcatggatgccatgtttcctaacataagtcactcccaattgttcatccacaagtttatttcctccttcttcatttata 414  T
Q  316 cttagaggcaaagtgtagaaatcacccataatcagaaggtgaagtaaacacaccacatgccatctttggtgccatctctccataaatgcatatataaggt 415  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  415 cttagaggctaagtgtagaaatcacccataatcagaaggtgaagtaaacacaccacatgccatctttggtgccatctctccataaatgcatatataaggt 514  T
Q  416 tggtttcaactatcttcaaattgatctcttaaatgcgctcaaaccttaacctatcacccatttaccaaaggggtaagatatctaggatcccaagccttcg 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  515 tggtttcaactatcttcaaattgatctcttaaatgcgctcaaaccttaacctatcacccatttaccaaaggggtaagatatctaggatcccaagccttcg 614  T
Q  516 annnnnnnctccaagatgccaccatcaactccttcttcggtctgtgctcc 565  Q
    |       ||||||||||||||||||||||||||||||||||| ||||||    
T  615 atttttttctccaagatgccaccatcaactccttcttcggtctttgctcc 664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 7275389 - 7275143
Alignment:
Q  19 atttccggcatctttccttgtattttttcatttcaagttggaagtgttttgtacaccttccaacttgagggggactattagagatatagattagtagcat 118  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7275389 atttctggcatctttccttgtattttctcatttcaagttggaagtgttttgaacaccttccaacttgagggggactattagagatatagattagtagcat 7275290  T
Q  119 attaatcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccattttcatcaatagaaagagtt 218  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7275289 attagtcctagtagagagtagtataaataacttgtaaccaccccattagagggtacttttctcattttgtaatattccattttcatcaatagaaagagtt 7275190  T
Q  219 tcttagttttctct--ttc-tttcatggatgccatatttcctaacat 262  Q
    ||||||||||||||  ||| |||||||||| |||| |||||||||||    
T  7275189 tcttagttttctctccttcttttcatggataccatgtttcctaacat 7275143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 94 - 262
Target Start/End: Complemental strand, 7277919 - 7277748
Alignment:
Q  94 tattagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 193  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7277919 tattagagatatagattattagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggtacttttctcattttgtaatat 7277820  T
Q  194 tccattttcatcaatagaaagagtttcttagttttctct--ttcttt-catggatgccatatttcctaacat 262  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| ||||||| |||| |||||||||||    
T  7277819 tccattttcatcaatagaaagagtttcttagttttctctccttctttccatggataccatgtttcctaacat 7277748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 95 - 262
Target Start/End: Original strand, 13856639 - 13856810
Alignment:
Q  95 attagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattagaggg-aacttt-tctcattttgtaata 192  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||  |||| |||||| ||    
T  13856639 attagagatatagattagtggcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggttactttcactca-tttgtagta 13856737  T
Q  193 ttccattttcatcaatagaaagagtttcttagttttctct--ttcttt-catggatgccatatttcctaacat 262  Q
    ||||||||  ||||||| |||| |||  ||||||||||||  |||||| |||||||| ||| |||| ||||||    
T  13856738 ttccatttctatcaatacaaagtgttcgttagttttctctccttctttccatggatgtcatgtttcataacat 13856810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 26175317 - 26175400
Alignment:
Q  23 ccggcatctttccttgtattttttcatttcaagttggaagtgttttgtacaccttccaacttgagggggactattagagatata 106  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  26175317 ccggcatctttccttgtattttctcatttcaagttggaaatgttttgaacaccttccaacttgagggggactattagagatata 26175400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 3567639 - 3567522
Alignment:
Q  116 catattaatcctagtagagagtagtataaataacttgtaaccaccccattagaggga-actttt---ctcattttgtaatattccattttcatcaataga 211  Q
    ||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||| ||||||   |||| |||||||||||||||||||||||||| |    
T  3567639 catattagtcctagcagagagtagtataaataacctgtaaccaccctattagagggatactttttcactca-tttgtaatattccattttcatcaataca 3567541  T
Q  212 aagagtttcttagttttct 230  Q
    |||||||| |||| |||||    
T  3567540 aagagtttgttagatttct 3567522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 193; Significance: 1e-104; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 41832499 - 41832745
Alignment:
Q  19 atttccggcatctttccttgtattttttcatttcaagttggaagtgttttgtacaccttccaacttgagggggactattagagatatagattagtagcat 118  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  41832499 atttctggcatctttccttgtattttctcatttcaagttggaagtgttttgaacaccttccaacttgaaggggactattagagatatagattagtagcat 41832598  T
Q  119 attaatcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccattttcatcaatagaaagagtt 218  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  41832599 attagtcctagtagagagtagtataaataacttgtaaccaccccattagagggtacttttctcattttgtaatattcaattttcatcaatagaaagagtt 41832698  T
Q  219 tcttagttttctc---tttctttcatggatgccatatttcctaacat 262  Q
    |||||||||||||   || ||| |||||||||||| |||||||||||    
T  41832699 tcttagttttctctcattccttccatggatgccatgtttcctaacat 41832745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 94 - 262
Target Start/End: Original strand, 41830168 - 41830339
Alignment:
Q  94 tattagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 193  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41830168 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 41830267  T
Q  194 tccattttcatcaatagaaagagtttcttagttttctc---tttctttcatggatgccatatttcctaacat 262  Q
    || |||| ||||||||||||||||||||||||||||||   || ||| |||||||| ||| |||||||||||    
T  41830268 tcaatttacatcaatagaaagagtttcttagttttctctcattccttccatggatgacatgtttcctaacat 41830339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 94 - 261
Target Start/End: Complemental strand, 8083559 - 8083389
Alignment:
Q  94 tattagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 193  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  8083559 tattaaagatatagattagtagcatattagtcctagtaaagagtagtataaataacttctaaccaccccattagagggaacttttgtcattttgtaatat 8083460  T
Q  194 tccattttcatcaatagaaagagtttcttagttttct---ctttctttcatggatgccatatttcctaaca 261  Q
    | |||||||||||||||||||||||| ||||||||||   ||| ||| |||||||||||| ||||||||||    
T  8083459 ttcattttcatcaatagaaagagttttttagttttctctccttccttccatggatgccatgtttcctaaca 8083389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 34512721 - 34512805
Alignment:
Q  20 tttccggcatctttccttgtattttttcatttcaagttggaagtgttttgtacaccttccaacttgagggggactattagagata 104  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  34512721 tttccggcatctttccttgtattttctcatttcaagttgaaagtgttttgaacaccttccaacttgagggggactattagagata 34512805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 7737214 - 7737295
Alignment:
Q  31 tttccttgtattttttcatttcaagttggaagtgttttgtacaccttccaacttgagggggactattagagatatagattag 112  Q
    |||||||||||||| ||||  ||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| ||||    
T  7737214 tttccttgtattttctcatcccaagttggaagtggtttgaacaccttccaacttgcgggggactattagagatataggttag 7737295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 23612241 - 23612309
Alignment:
Q  54 agttggaagtgttttgtacaccttccaacttgagggggactattagagatatagattagtagcatatta 122  Q
    ||||||||||||| || ||||||||||||||| | ||||||||||||||||||| |||||  |||||||    
T  23612241 agttggaagtgttgtgaacaccttccaacttgcgagggactattagagatatagtttagtttcatatta 23612309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 25432047 - 25432155
Alignment:
Q  107 gattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttt-tctcattttgtaatattccattttcatc 205  Q
    ||||||| | |||||| ||||| |||| |||| |||||||| ||||||||||||||||||| ||| |||||  |||| || ||||||||| |||| ||||    
T  25432047 gattagtggtatattagtcctaatagatagtactataaatagcttgtaaccaccccattagtgggcactttcactca-ttcgtaatattcaatttccatc 25432145  T
Q  206 aatagaaaga 215  Q
    |||| |||||    
T  25432146 aatataaaga 25432155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 23613779 - 23613827
Alignment:
Q  184 tttgtaatattccattttcatcaatagaaagagtttcttagttttctct 232  Q
    ||||||||||| ||||| |||||||| ||||||||| ||||||||||||    
T  23613779 tttgtaatatttcatttccatcaataaaaagagtttgttagttttctct 23613827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 225
Target Start/End: Original strand, 23613667 - 23613766
Alignment:
Q  127 tagtagagagtagtataaataacttgtaaccaccccattagagggaacttttc--tcattttgtaatattccattttcatcaatagaaagagtttcttag 224  Q
    |||||||  ||||||||||||  |||||||||||  ||||| |||||  ||||  |||||| |||||||| ||||| |||||||| ||||||||| ||||    
T  23613667 tagtagattgtagtataaatagtttgtaaccacctaattagtgggaaactttcactcattt-gtaatatttcatttccatcaataaaaagagtttgttag 23613765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 26 - 261
Target Start/End: Original strand, 21256520 - 21256758
Alignment:
Q  26 gcatctttccttgtattttttcatttcaagttggaagtgttttgtacaccttccaacttgagggggactattagagatatagattagtagcatattaatc 125  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  21256520 gcatctttccttgtattttctcatttcaagttggaagtgttttgaacaccttccaacttgagagggactattagagatatagattagtagcatattagtc 21256619  T
Q  126 ctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccattttcatcaatagaaagagtttcttagt 225  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21256620 atagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccattttcatcaatagaaagagtttgttagt 21256719  T
Q  226 tttct---ctttctttcatggatgccatatttcctaaca 261  Q
    |||||   ||| ||| |||||||||||| ||||||||||    
T  21256720 tttctctccttccttccatggatgccatgtttcctaaca 21256758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 94 - 262
Target Start/End: Original strand, 21254116 - 21254287
Alignment:
Q  94 tattagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 193  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21254116 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccgccccattagagggaacttttctcattttgtaatat 21254215  T
Q  194 tccattttcatcaatagaaagagtttcttagttttct---ctttctttcatggatgccatatttcctaacat 262  Q
    ||| |||||||||||||||||||||| ||| ||||||   ||| ||| |||||||||||| |||||||||||    
T  21254216 tcctttttcatcaatagaaagagtttgttacttttctctccttccttccatggatgccatgtttcctaacat 21254287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 94 - 262
Target Start/End: Complemental strand, 26873331 - 26873160
Alignment:
Q  94 tattagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 193  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||  |||||||||| |||||||||||||| |||||||    
T  26873331 tattagagatatagattagtagcatattagtcctagtagagagtagtaaaaataacttgtaatcattccattagaggaaacttttctcatttcgtaatat 26873232  T
Q  194 tccattttcatcaatagaaagagtttcttagttttct---ctttctttcatggatgccatatttcctaacat 262  Q
    || |||| |||||||||||||||||||||||||||||   ||| ||| |||||||||||| |||||||||||    
T  26873231 tctatttccatcaatagaaagagtttcttagttttctctccttccttccatggatgccatgtttcctaacat 26873160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 94 - 232
Target Start/End: Complemental strand, 31339309 - 31339170
Alignment:
Q  94 tattagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattagaggg-aacttttctcattttgtaata 192  Q
    |||||||||||| || || ||  |||||| |||||||||||||||||||||||||||||||||||||||||||| |||  | ||  ||||||||||||||    
T  31339309 tattagagatattgaataatattatattagtcctagtagagagtagtataaataacttgtaaccaccccattagtgggtcaattcactcattttgtaata 31339210  T
Q  193 ttccattttcatcaatagaaagagtttcttagttttctct 232  Q
    ||| |||| |||| ||||||||||||||||||||||||||    
T  31339209 ttcaatttccatcgatagaaagagtttcttagttttctct 31339170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 35304901 - 35304832
Alignment:
Q  37 tgtattttttcatttcaagttggaagtgttttgtacaccttccaacttgagggggactattagagatata 106  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  35304901 tgtattttctcatttcaagttggaagtgttttgaacaccttccaacttgagggggactatttgagatata 35304832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 43233727 - 43233814
Alignment:
Q  19 atttccggcatctttccttgtattttttcatttcaagttggaagtgttttgtacaccttccaacttgagggggactattagagatata 106  Q
    |||||||| ||||||||||||||||| ||||  |||||||||||||||||| || |||||||||||| ||||||||||||||| ||||    
T  43233727 atttccggtatctttccttgtattttctcatcccaagttggaagtgttttgaacgccttccaacttgcgggggactattagagttata 43233814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 41949570 - 41949496
Alignment:
Q  31 tttccttgtattttttcatttcaagttggaagtgttttgtacaccttccaacttgagggggactattagagatat 105  Q
    |||||||||||||| |||||||||  |||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  41949570 tttccttgtattttctcatttcaatgtggaagtgttttgagcaccttccaacttgagggggactattagatatat 41949496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 4730657 - 4730741
Alignment:
Q  180 tcattttgtaatattccattttcatcaatagaaagagtttcttag----ttttctctttctttcatggatgccatatttcctaac 260  Q
    ||||||||||||||||||||| |||||||| ||||||||| ||||    ||||||| ||| | |||||||||||| |||||||||    
T  4730657 tcattttgtaatattccatttccatcaatacaaagagtttgttagctttttttctccttcatccatggatgccatgtttcctaac 4730741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 15543873 - 15543761
Alignment:
Q  45 ttcatttcaagttggaagtgttttgtacaccttccaacttgagggggactattagagatatagattagtagcatattaatcctagtag-agagtagtata 143  Q
    ||||| |||||||||||||| | || |||||||||||||||  ||| |||||| || ||||| | |||| |||||||| ||||| |||   |||||||||    
T  15543873 ttcatctcaagttggaagtgctgtgaacaccttccaacttgctgggcactattggaaatataaactagtggcatattagtcctaatagttaagtagtata 15543774  T
Q  144 aataacttgtaac 156  Q
    |||| ||||||||    
T  15543773 aatagcttgtaac 15543761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 15531535 - 15531461
Alignment:
Q  117 atattaatcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttt-tctcattttgtaa 190  Q
    |||||| ||||| |||| |||| ||||||||  |||||||||||||||||| |||||||||  ||||||||||||    
T  15531535 atattagtcctaatagatagtactataaatagtttgtaaccaccccattagtgggaactttcactcattttgtaa 15531461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 15531644 - 15531586
Alignment:
Q  117 atattaatcctagtagagagtagtataaataacttgtaaccaccccattagagggaact 175  Q
    |||||| ||||| |||| |||| |||||||| ||||||||||||| ||||| |||||||    
T  15531644 atattagtcctaatagatagtactataaatagcttgtaaccacccaattagtgggaact 15531586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 167
Target Start/End: Original strand, 17823477 - 17823594
Alignment:
Q  52 caagttggaagtgttttgtacaccttccaacttgagggggactatt--agagatatagattagtagcatattaatcctagtagagagtagtataaataac 149  Q
    ||||||| ||||||| || |||||||||||||||  ||||||||||  | | |||||||||| | | | |||| || ||||| | | |||||||||||||    
T  17823477 caagttgaaagtgttatgaacaccttccaacttgcaggggactattggatatatatagattaatggtacattagtcatagtaaatattagtataaataac 17823576  T
Q  150 ttgtaaccaccccattag 167  Q
    ||||| ||| || |||||    
T  17823577 ttgtagccatcctattag 17823594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 2e-97; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 26 - 261
Target Start/End: Original strand, 24039358 - 24039596
Alignment:
Q  26 gcatctttccttgtattttttcatttcaagttggaagtgttttgtacaccttccaacttgagggggactattagagatatagattagtagcatattaatc 125  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24039358 gcatctttccttgtattttctcatttcaagttggaagtgttttgaacaccttccaacttgagggggactattagagatatagattagtagcatattagtc 24039457  T
Q  126 ctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccattttcatcaatagaaagagtttcttagt 225  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  24039458 ctagtagagagtagtataaataacttgtaaccacctcattagagggcacttttctcatattgtaatattccattttcatcaatagaaaaagtttcttagt 24039557  T
Q  226 tttctc---tttctttcatggatgccatatttcctaaca 261  Q
    ||||||   || ||| |||||||||||| ||| ||||||    
T  24039558 tttctctcattccttccatggatgccatgttttctaaca 24039596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 26 - 264
Target Start/End: Complemental strand, 31269700 - 31269460
Alignment:
Q  26 gcatctttccttgtattttttcatttcaagttggaagtgttttgtacaccttccaacttgagggggactattagagatatagattagtagcatattaatc 125  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||| ||    
T  31269700 gcatctttccttgtattttctcatttcaagttggaagtgttttgaacaccttccaacttgagggggactattagatatatagat-agtagcatattagtc 31269602  T
Q  126 ctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccattttcatcaatagaaagagtttcttagt 225  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  31269601 ctagtagagagtaatataaataacttgtaaccaccccattagagggtacttttctcattttgtaatattcaatttccatcaatagaaagagtttcttagt 31269502  T
Q  226 tttct---ctttctttcatggatgccatatttcctaacataa 264  Q
    |||||   ||| ||| |||||||||||| |||||||||||||    
T  31269501 tttctctccttccttccatggatgccatgtttcctaacataa 31269460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 94 - 262
Target Start/End: Original strand, 24038231 - 24038402
Alignment:
Q  94 tattagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 193  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||    
T  24038231 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccactccattagagggcacttttctcatattgtaatat 24038330  T
Q  194 tccattttcatcaatagaaagagtttcttagttttctc---tttctttcatggatgccatatttcctaacat 262  Q
    |||||||||||||||||||| |||||||||||||||||   || ||| |||||||||||| ||| |||||||    
T  24038331 tccattttcatcaatagaaaaagtttcttagttttctctcattccttccatggatgccatgttttctaacat 24038402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 93 - 261
Target Start/End: Original strand, 31180185 - 31180355
Alignment:
Q  93 ctattagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaata 192  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  31180185 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttctaaccaccccattagaggg-acttttctcattttgtaata 31180283  T
Q  193 ttccattttcatcaatagaaagagtttcttagttttct---ctttctttcatggatgccatatttcctaaca 261  Q
    |||||||| |||||||||||||||||||||||||||||   ||| ||| ||||||||||||  |||||||||    
T  31180284 ttccatttccatcaatagaaagagtttcttagttttctctccttccttccatggatgccatgcttcctaaca 31180355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 36316515 - 36316443
Alignment:
Q  35 cttgtattttttcatttcaagttggaagtgtttt-gtacaccttccaacttgagggggactattagagatata 106  Q
    |||||||||| | ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  36316515 cttgtattttcttatttcaagttggaagtgtttttgaacaccttccaacttgagggggactattagagatata 36316443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 36402832 - 36402728
Alignment:
Q  116 catattaatcctagtagagagtagtataaataacttgtaaccaccccattagaggg-aactttt-ctcattttgtaatattccattttcatcaatagaaa 213  Q
    ||||||| || |||||||   |||||||||||  |||||||||||||||||| ||| ||||||  ||||||| ||||||||| |||| |||||||| |||    
T  36402832 catattagtcttagtagattttagtataaatagtttgtaaccaccccattagtgggtaactttcactcattt-gtaatattctatttccatcaatacaaa 36402734  T
Q  214 gagttt 219  Q
    ||||||    
T  36402733 gagttt 36402728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 173; Significance: 9e-93; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 27 - 261
Target Start/End: Complemental strand, 2266 - 2028
Alignment:
Q  27 catctttccttgtattttttcatttcaagttggaagtgtttt-gtacaccttccaacttgagggggactattagagatatagattagtagcatattaatc 125  Q
    |||||||||||||| ||| ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||| |||||||||| ||    
T  2266 catctttccttgtactttctcatttcaagttggaagtgtttttgaacaccttctaacttgagggggactattagagatatagattaatagcatattagtc 2167  T
Q  126 ctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccattttcatcaatagaaagagtttcttagt 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2166 ctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccatttccatcaatagaaagagtttcttagt 2067  T
Q  226 tttct---ctttctttcatggatgccatatttcctaaca 261  Q
    |||||   ||| ||| |||||||||||| ||||| ||||    
T  2066 tttctctccttccttccatggatgccatgtttcccaaca 2028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 7e-72; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 94 - 262
Target Start/End: Complemental strand, 18705878 - 18705707
Alignment:
Q  94 tattagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 193  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18705878 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 18705779  T
Q  194 tccattttcatcaatagaaagagtttcttagttttct---ctttctttcatggatgccatatttcctaacat 262  Q
    || ||||||||||||||||||||||||||||||||||   ||| |||||||||||||||| ||| |||||||    
T  18705778 tctattttcatcaatagaaagagtttcttagttttctctccttcctttcatggatgccatgttttctaacat 18705707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 9906024 - 9905943
Alignment:
Q  31 tttccttgtattttttcatttcaagttggaagtgttttgtacaccttccaacttgagggggactattagagatatagattag 112  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  9906024 tttccttgtattttctcatttcaagttggaagtgttttgaacaccttccaacttgagggggactattagagatatagtttag 9905943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 12436186 - 12436259
Alignment:
Q  94 tattagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattag 167  Q
    |||| ||||||||||||||| |||||||| | |||||| | ||||||||||||| || ||||||||||||||||    
T  12436186 tattggagatatagattagtggcatattagttctagtaaatagtagtataaatagctagtaaccaccccattag 12436259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 35267639 - 35267574
Alignment:
Q  102 atatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattag 167  Q
    |||||||| |||  || ||||||||||||||  | |||||||||||||||||||| ||||||||||    
T  35267639 atatagatgagtgacacattaatcctagtaggcattagtataaataacttgtaacaaccccattag 35267574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 438
Target Start/End: Complemental strand, 28249079 - 28249026
Alignment:
Q  385 tgccatctctccataaatgcatatataaggttggtttcaactatcttcaaattg 438  Q
    ||||| ||||||| ||||||||||||||||||||| ||||  ||||||| ||||    
T  28249079 tgccacctctccacaaatgcatatataaggttggtgtcaatcatcttcagattg 28249026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 2e-66; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 94 - 261
Target Start/End: Complemental strand, 30689804 - 30689634
Alignment:
Q  94 tattagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 193  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  30689804 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatat 30689705  T
Q  194 tccattttcatcaatagaaagagtttcttagttttctc---tttctttcatggatgccatatttcctaaca 261  Q
    | || |||||||||||||||||||||||||||||||||   || |||||||||||||||| ||||||||||    
T  30689704 ttcactttcatcaatagaaagagtttcttagttttctctcattcctttcatggatgccatgtttcctaaca 30689634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 94 - 262
Target Start/End: Complemental strand, 8655991 - 8655826
Alignment:
Q  94 tattagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 193  Q
    |||||||||||||||||| ||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8655991 tattagagatatagattaatagcatatta------gtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 8655898  T
Q  194 tccattttcatcaatagaaagagtttcttagttttctct--ttctttc-atggatgccatatttcctaacat 262  Q
    ||||||| |||||||||||||||||||||||||||||||  ||| ||| ||||||||||| |||||||||||    
T  8655897 tccatttccatcaatagaaagagtttcttagttttctctccttccttctatggatgccatgtttcctaacat 8655826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 6823261 - 6823176
Alignment:
Q  20 tttccggcatctttccttgtattttttcatttcaagttggaagtg-ttttgtacaccttccaacttgagggggactattagagata 104  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  6823261 tttccggcatctttccttgtattttctcatttcaagttggaagtgtttttgaacaccttccaacttgagggggactattagagata 6823176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 14618959 - 14618884
Alignment:
Q  31 tttccttgtattttttcatttcaagttggaagtgttttgtacaccttccaacttgagggggactattagagatata 106  Q
    ||||| |||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14618959 tttccctgtattttctcatttcatgttggaagtgttttgaacaccttccaacttgagggggactattagagatata 14618884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 175 - 262
Target Start/End: Complemental strand, 6825597 - 6825507
Alignment:
Q  175 ttttctcattttgtaatattccattttcatcaatagaaagagtttcttagttttct---ctttctttcatggatgccatatttcctaacat 262  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||| |||| ||| |   ||| ||| |||||||||||| |||||||||||    
T  6825597 ttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttatctccttccttccatggatgccatgtttcctaacat 6825507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 24249778 - 24249859
Alignment:
Q  184 tttgtaatattccattttcatcaatagaaagagtttcttagttttctct--ttcttt-catggatgccatatttcctaacat 262  Q
    ||||||||||||||||| ||| |||| ||||||||| ||||||||||||  |||||| ||| |||||||| |||||||||||    
T  24249778 tttgtaatattccatttccattaatacaaagagtttgttagttttctctcattctttacattgatgccatgtttcctaacat 24249859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 29427297 - 29427332
Alignment:
Q  71 acaccttccaacttgagggggactattagagatata 106  Q
    ||||||||||||||||||||||||||||||||||||    
T  29427297 acaccttccaacttgagggggactattagagatata 29427332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 6823124 - 6823075
Alignment:
Q  175 ttttctcattttgtaatattccattttcatcaatagaaagagtttcttag 224  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||| ||||    
T  6823124 ttttctcattttgtaatattccatttctatcaatacaaagagtttgttag 6823075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 2e-60; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 92 - 261
Target Start/End: Original strand, 2546986 - 2547158
Alignment:
Q  92 actattagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaat 191  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2546986 actattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaat 2547085  T
Q  192 attccattttcatcaatagaaagagtttcttagttttct---ctttctttcatggatgccatatttcctaaca 261  Q
    |||||||||  ||||||| ||||||||| |||| |||||   ||| ||| |||||||| ||| ||||||||||    
T  2547086 attccatttctatcaatacaaagagtttgttagatttctctccttccttccatggatgtcatgtttcctaaca 2547158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 29 - 261
Target Start/End: Original strand, 5444623 - 5444859
Alignment:
Q  29 tctttccttgtattttttcatttcaagttggaagtgttttgtacaccttccaacttgagggggactattagagatatagattagtagcata-ttaatcct 127  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||| ||  || ||| |  |    
T  5444623 tctttccttgtattttctcatttcaagttggaagtgttttgaacaccttccaacttgagggggactattagagatatatgttag-agattagttagtatt 5444721  T
Q  128 agtagag-agtagtataaataacttgtaaccaccccattagagggaa-cttttctcattttgtaatattccattttcatcaatagaaagagtttcttagt 225  Q
    |||  || ||||||||| |||  ||||||||||| ||||||| || | || || |||||| ||||||||||||||  ||||||| ||||||||| |||||    
T  5444722 agttaagtagtagtatatatag-ttgtaaccacctcattagaaggtatctcttatcattt-gtaatattccatttcaatcaatacaaagagtttgttagt 5444819  T
Q  226 ttt---ctctttcttt-catggatgccatatttcctaaca 261  Q
    |||   ||| |||||| ||| |||||||| ||||||||||    
T  5444820 ttttccctccttctttccatagatgccatgtttcctaaca 5444859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 20880177 - 20880131
Alignment:
Q  126 ctagtagagagtagtataaataacttgtaaccaccccattagaggga 172  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  20880177 ctagtagacagtagtataaataacttgtaaccaccccattagtggga 20880131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 11815067 - 11815122
Alignment:
Q  52 caagttggaagtgttttgtacaccttccaacttgagggggactattagagatatag 107  Q
    ||||||||||||||| |  ||||||||||||||| ||| |||||||||||||||||    
T  11815067 caagttggaagtgttgtaaacaccttccaacttgcgggagactattagagatatag 11815122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 35783779 - 35783859
Alignment:
Q  184 tttgtaatattccattttcatcaatagaaagagtttcttagtttt--ctctttcttt-catggatgccatatttcctaaca 261  Q
    |||||||||||||||||  ||||||| ||||||||| ||||||||  ||| |||||| |||||||||||| |||| |||||    
T  35783779 tttgtaatattccatttcaatcaatacaaagagtttgttagtttttcctccttctttccatggatgccatgtttcttaaca 35783859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 20879962 - 20880035
Alignment:
Q  94 tattagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattag 167  Q
    ||||||| |||||||||||| | | ||||   |||||||| | ||||||||||||||| |||||||| ||||||    
T  20879962 tattagaaatatagattagtggtacattagctctagtagacattagtataaataacttataaccacctcattag 20880035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 4174808 - 4174760
Alignment:
Q  184 tttgtaatattccattttcatcaatagaaagagtttcttagttttctct 232  Q
    |||||||||||| |||||||| |||| ||||||||||| | ||||||||    
T  4174808 tttgtaatattctattttcattaatacaaagagtttctaacttttctct 4174760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 94 - 261
Target Start/End: Complemental strand, 111714 - 111544
Alignment:
Q  94 tattagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 193  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  111714 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 111615  T
Q  194 tccattttcatcaatagaaagagtttcttagttttct---ctttctttcatggatgccatatttcctaaca 261  Q
    |||||||  ||||||| ||||||||| |||  |||||   ||| ||| |||||||||||| ||||||||||    
T  111614 tccatttaaatcaataaaaagagtttattaaatttctctccttccttccatggatgccatgtttcctaaca 111544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 94 - 230
Target Start/End: Original strand, 4583 - 4719
Alignment:
Q  94 tattagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 193  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||  |||||||||||||    
T  4583 tattagatatatagattagtagcatattagtcctagtagagagtagtataaataatttgtaaccaccctattagagggaactttttccattttgtaatat 4682  T
Q  194 tccattttcatcaatagaaagagtttcttagttttct 230  Q
    | |||||||||||||||||||||||||||||||||||    
T  4683 ttcattttcatcaatagaaagagtttcttagttttct 4719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 52 - 216
Target Start/End: Original strand, 570 - 734
Alignment:
Q  52 caagttggaagtgttttgtacaccttccaacttgagggggactattagagatatagattagtagcatattaatcctagtagagagtagtataaataactt 151  Q
    ||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  570 caagttggaagtgttgtgaacaccttccaacttgcgggggactattagagatatagattagtgccatattaatcctagtagagagtagtataaataactt 669  T
Q  152 gtaaccaccccattagaggg-aacttttctcattttgtaatattccattttcatcaatagaaagag 216  Q
    ||| ||||||||||||||||  ||||  |||||||| |||||||| |||| |||||||| ||||||    
T  670 gtatccaccccattagagggtgacttcactcatttt-taatattcaatttccatcaatacaaagag 734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 7e-32; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 52 - 171
Target Start/End: Complemental strand, 8504417 - 8504296
Alignment:
Q  52 caagttggaagtgttttgtacaccttccaacttgagggggactattagagatata--gattagtagcatattaatcctagtagagagtagtataaataac 149  Q
    ||||||| ||||||| || ||||||||||||||| ||||||||||||||||||||  ||||||| |||||||| |||||||| |||||||||||||||||    
T  8504417 caagttgaaagtgttgtgaacaccttccaacttgcgggggactattagagatatatagattagtggcatattagtcctagtaaagagtagtataaataac 8504318  T
Q  150 ttgtaaccaccccattagaggg 171  Q
    ||||||| |||  |||||||||    
T  8504317 ttgtaacaaccaaattagaggg 8504296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 94 - 261
Target Start/End: Complemental strand, 10018948 - 10018777
Alignment:
Q  94 tattagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattaga-gggaactt-ttctcattttgtaat 191  Q
    |||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| ||||  |||||| ||  ||||   |||| ||||||||    
T  10018948 tattagagatatagattagtggcatattagttctagtagagagtagtataaataacttgtaatcaccttattagatggttacttccactca-tttgtaat 10018850  T
Q  192 attccattttcatcaatagaaagagtttcttagttttctct--ttcttt-catggatgccatatttcctaaca 261  Q
    ||| ||||| |||||||| ||||||||| ||||||||||||  |||||| |||||||||||| ||||||||||    
T  10018849 atttcatttccatcaatacaaagagtttgttagttttctctccttctttccatggatgccatgtttcctaaca 10018777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 94 - 261
Target Start/End: Complemental strand, 10256262 - 10256091
Alignment:
Q  94 tattagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattaga-gggaactt-ttctcattttgtaat 191  Q
    |||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||  |||||| ||  ||||   |||| ||||||||    
T  10256262 tattagagatatagattagtggcatattagttctagtagagagtagtataaataacttgtaaccaccttattagatggttacttccactca-tttgtaat 10256164  T
Q  192 attccattttcatcaatagaaagagtttcttagttttctct--ttcttt-catggatgccatatttcctaaca 261  Q
    ||| ||||| |||||||| ||| ||||| ||||||||||||  |||||| |||||||||||| ||||||||||    
T  10256163 atttcatttccatcaatacaaaaagtttgttagttttctctccttctttccatggatgccatgtttcctaaca 10256091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 4607338 - 4607417
Alignment:
Q  27 catctttccttgtattttttcatttcaagttggaagtgttttgtacaccttccaacttgagggggactattagagatata 106  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  4607338 catctttccttgtattttctcatttcaagttggaagtgttttgaacaccttccaacttgagggggactatttgagatata 4607417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 94 - 261
Target Start/End: Complemental strand, 10180145 - 10179974
Alignment:
Q  94 tattagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattagaggg-aacttt-tctcattttgtaat 191  Q
    |||||||||||||||||||| |||||||| |  |||||||||||| |||||||||||||||| || || |||||||||  |||||  |||| ||||||||    
T  10180145 tattagagatatagattagtggcatattagttgtagtagagagtaatataaataacttgtaatcatcctattagagggttactttcactca-tttgtaat 10180047  T
Q  192 attccattttcatcaatagaaagagtttcttagttttctct--ttc-tttcatggatgccatatttcctaaca 261  Q
    ||| ||||| |||||||| ||||||||| ||||||||||||  ||| ||||||||||| ||| ||||||||||    
T  10180046 atttcatttccatcaatacaaagagtttgttagttttctctccttcttttcatggatgtcatgtttcctaaca 10179974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 42656420 - 42656345
Alignment:
Q  31 tttccttgtattttttcatttcaagttggaagtgttttgtacaccttccaacttgagggggactattagagatata 106  Q
    ||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42656420 tttccgtgtattttctcatttcaagttggaagtgttttgaacaccttccaacttgagggggactattagagatata 42656345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 128 - 261
Target Start/End: Complemental strand, 10123454 - 10123317
Alignment:
Q  128 agtagagagtagtataaataacttgtaaccaccccattagaggga-actttt-ctcattttgtaatattccattttcatcaatagaaagagtttcttagt 225  Q
    |||||| ||||||||||||||||||||||||||  |||||||||  ||||   ||||||| |||||||| ||||| |||||||| ||||||||| |||||    
T  10123454 agtagaaagtagtataaataacttgtaaccaccttattagagggttacttccactcattt-gtaatatttcatttccatcaatacaaagagtttgttagt 10123356  T
Q  226 tttctct--ttc-tttcatggatgccatatttcctaaca 261  Q
    |||||||  ||| ||||||||||||||| ||||||||||    
T  10123355 tttctctccttcttttcatggatgccatgtttcctaaca 10123317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 10661871 - 10661756
Alignment:
Q  150 ttgtaaccaccccattagaggga-actttt-ctcattttgtaatattccattttcatcaatagaaagagtttcttagttttctct--ttcttt-catgga 244  Q
    |||||||||||||||||| |||| |||||  ||||||| ||||||||||||||||   | || ||||||||| ||||||||||||  |||||| ||||||    
T  10661871 ttgtaaccaccccattagtgggatactttcactcattt-gtaatattccattttccatactacaaagagtttgttagttttctctcattctttccatgga 10661773  T
Q  245 tgccatatttcctaaca 261  Q
    || ||| ||||||||||    
T  10661772 tgtcatgtttcctaaca 10661756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 782954 - 782838
Alignment:
Q  150 ttgtaaccaccccattagaggga-actttt--ctcattttgtaatattccattttcatcaatagaaagagtttcttagttttct---ctttctttcatgg 243  Q
    ||||||||||||||| || |||| ||||||  ||||||| ||||||||||||||  ||||||| ||||||||| |||| |||||   ||| ||| |||||    
T  782954 ttgtaaccaccccataagtgggacactttttactcattt-gtaatattccatttctatcaatacaaagagtttgttagatttctctccttccttccatgg 782856  T
Q  244 atgccatatttcctaaca 261  Q
    ||| ||| ||||||||||    
T  782855 atgtcatgtttcctaaca 782838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 10511141 - 10511058
Alignment:
Q  150 ttgtaaccaccccattagaggga-acttttc-tcattttgtaatattccattttcatcaatagaaagagtttcttagttttctct 232  Q
    |||||||||||||||||| |||| ||||| | |||||| ||||||||||||||||   |||| ||||||||| ||||||||||||    
T  10511141 ttgtaaccaccccattagtgggatactttccctcattt-gtaatattccattttccataatacaaagagtttgttagttttctct 10511058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 10514429 - 10514351
Alignment:
Q  186 tgtaatattccatttt-catcaatagaaagagtttcttagttttctct--ttcttt-catggatgccatatttcctaaca 261  Q
    |||||||||||||||| ||| |||| ||||||||| ||||||||||||  |||||| ||||||||||||  |||||||||    
T  10514429 tgtaatattccatttttcat-aatacaaagagtttattagttttctctccttctttccatggatgccatgattcctaaca 10514351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 232
Target Start/End: Complemental strand, 19954622 - 19954483
Alignment:
Q  94 tattagagatatagattagtagcatattaatcctagtagagagtagtataaataacttgtaaccaccccattagaggg-aacttt-tctcattttgtaat 191  Q
    |||| ||||||||| |||||  |||| || || | |||||  ||||||||||||  ||||||| ||| |||||| ||| ||||||  |||| |||||| |    
T  19954622 tattggagatatagtttagtttcataatagtctttgtagattgtagtataaatagtttgtaacaacctcattagtgggtaactttcactca-tttgtatt 19954524  T
Q  192 attccattttcatcaatagaaagagtttcttagttttctct 232  Q
    ||||||||| |||||||| |||||| || |||| |||||||    
T  19954523 attccatttccatcaatacaaagagattgttagatttctct 19954483  T

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Target: scaffold0001 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 144887 - 144802
Alignment:
Q  20 tttccggcatctttccttgtattttttcatttcaagttggaagtg-ttttgtacaccttccaacttgagggggactattagagata 104  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  144887 tttccggcatctttccttgtattttctcatttcaagttggaagtgtttttgaacaccttccaacttgagggggactattagagata 144802  T

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Target: scaffold0001; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 144750 - 144661
Alignment:
Q  175 ttttctcattttgtaatattccattttcatcaatagaaagagtttcttagttttct---ctttctttcatggatgccatatttcctaaca 261  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||| |||| ||| |   ||| ||| ||| |||||||| ||||||||||    
T  144750 ttttctcattttgtaatattccatttctatcaatataaagagtttgttagatttatctccttccttccatagatgccatgtttcctaaca 144661  T

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Target: scaffold0001; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 175 - 262
Target Start/End: Complemental strand, 146809 - 146719
Alignment:
Q  175 ttttctcattttgtaatattccattttcatcaatagaaagagtttcttag--ttttctctttctttc-atggatgccatatttcctaacat 262  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||| ||||  || |||| ||| ||| || |||||||| |||||||||||    
T  146809 ttttctcattttgtaatattccatttctatcaatataaagagtttgttagatttatctccttccttctatagatgccatgtttcctaacat 146719  T

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Target: scaffold0263 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 22825 - 22900
Alignment:
Q  31 tttccttgtattttttcatttcaagttggaagtgttttgtacaccttccaacttgagggggactattagagatata 106  Q
    |||||||||||||| ||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  22825 tttccttgtattttctcatttcaaattggaagtgttttgaacaccttccaacatgagggggactattagagatata 22900  T

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