View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2827_low_6 (Length: 466)

Name: NF2827_low_6
Description: NF2827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2827_low_6
NF2827_low_6
[»] chr7 (1 HSPs)
chr7 (96-456)||(44500129-44500489)
[»] chr4 (3 HSPs)
chr4 (101-385)||(3979331-3979617)
chr4 (359-453)||(3981637-3981731)
chr4 (315-402)||(36590329-36590416)
[»] chr5 (4 HSPs)
chr5 (249-411)||(7975719-7975881)
chr5 (287-383)||(38141026-38141122)
chr5 (315-374)||(7895933-7895992)
chr5 (121-207)||(7975912-7975998)
[»] chr3 (7 HSPs)
chr3 (306-456)||(45909973-45910123)
chr3 (108-205)||(45869854-45869951)
chr3 (273-381)||(45880802-45880910)
chr3 (328-387)||(20993635-20993694)
chr3 (121-209)||(2995444-2995532)
chr3 (273-381)||(45855761-45855869)
chr3 (121-190)||(7119798-7119867)
[»] chr6 (2 HSPs)
chr6 (287-368)||(33843079-33843157)
chr6 (329-368)||(33839163-33839202)


Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 96 - 456
Target Start/End: Complemental strand, 44500489 - 44500129
Alignment:
Q  96 gactataattcacttgcatccatctttgcttaggttctcttcttaattcctgatctcttgaagattaatcaaccttccttgcataacttggagtcgctga 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44500489 gactataattcacttgcatccatctttgcttaggttctcttcttaattcctgatctcttgaagattaatcaaccttccttgcttaacttggagtcgctga 44500390  T
Q  196 aagtgaaaatggaagaaattttataaattttgcataaccctgagggatgcaaagttacagaaagccaagtcacagagagaagctgcaaggatacgaaaag 295  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44500389 aagtgaaaatggaagaaattttataaattttgcataaccctgaaggatgcaaagttacagaaagccaagtcacagagagaagctgcaaggatacgaaaag 44500290  T
Q  296 cacttaaagcaggattgagaccatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccattggcagaagttgacttcatcgatcg 395  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44500289 cacttaaagaaggattgagaccatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccattggcagaagttgacttcatcgatcg 44500190  T
Q  396 ctcaaggcgacctctttaagagagatatttataatcggtttgtttattgttcccttctctg 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44500189 ctcaaggcgacctctttaagagagatatttataatcggtttgtttcttgttcccttctctg 44500129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 101 - 385
Target Start/End: Original strand, 3979331 - 3979617
Alignment:
Q  101 taattcacttgcatccatctttgcttaggttctcttcttaattcctgatctcttgaagattaatcaaccttccttgcataacttggagtcgctgaaagtg 200  Q
    ||||||||||||||||  | |||| |||||||||| ||||  ||||||| | ||||||||||    ||||||||||||||||||| ||||  ||||||||    
T  3979331 taattcacttgcatcccccattgcctaggttctctccttatatcctgatgttttgaagattagattaccttccttgcataacttgaagtcattgaaagtg 3979430  T
Q  201 aaaatggaagaaattttataa--attttgcataaccctgagggatgcaaagttacagaaagccaagtcacagagagaagctgcaaggatacgaaaagcac 298  Q
    | |||||||||| |||| ||   |||| |||| || || ||||||   ||||||||||| ||||| ||| ||||||||||||| |||||||||||||||     
T  3979431 agaatggaagaacttttgtatggatttcgcatgacactaagggatatcaagttacagaacgccaaatcaaagagagaagctgctaggatacgaaaagcat 3979530  T
Q  299 ttaaagcaggattgagaccatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccattggcagaagttgact 385  Q
    |||||| ||| |||  |||| ||||||| ||||||||| |||||||||||||||||  |||||||||||| |||| |||||||||||    
T  3979531 ttaaagaagggttggaaccaccttcacccgtacctgatggaatagtggacttcttgtgtcaaaattcacccttggtagaagttgact 3979617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 453
Target Start/End: Original strand, 3981637 - 3981731
Alignment:
Q  359 aaaattcaccattggcagaagttgacttcatcgatcgctcaaggcgacctctttaagagagatatttataatcggtttgtttattgttcccttct 453  Q
    |||||||| | ||| |||||||||||| ||| ||| ||  ||||||||||| | |||||||||||||||||| ||||||||| ||||| ||||||    
T  3981637 aaaattcatcgttgacagaagttgactacatagattgcaaaaggcgacctcatgaagagagatatttataattggtttgttttttgtttccttct 3981731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 402
Target Start/End: Complemental strand, 36590416 - 36590329
Alignment:
Q  315 accatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccattggcagaagttgacttcatcgatcgctcaagg 402  Q
    ||||||||||||  |||||||| ||||||||||||| ||| ||||||| ||||| |  |||||||||||| |||| ||| ||||||||    
T  36590416 accatcttcacccatacctgatggaatagtggactttttgattcaaaactcaccgtcagcagaagttgacatcatagatagctcaagg 36590329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 249 - 411
Target Start/End: Complemental strand, 7975881 - 7975719
Alignment:
Q  249 gttacagaaagccaagtcacagagagaagctgcaaggatacgaaaagcacttaaagcaggattgagaccatcttcacctgtacctgatagaatagtggac 348  Q
    ||||||||||  ||||||| ||| ||||||||| | | ||||||||||| ||| ||  ||||||| |||||||||||   |||||||| |||||||||||    
T  7975881 gttacagaaaatcaagtcaaagaaagaagctgctaagttacgaaaagcatttagagatggattgaaaccatcttcactcatacctgatggaatagtggac 7975782  T
Q  349 ttcttgcttcaaaattcaccattggcagaagttgacttcatcgatcgctcaaggcgacctctt 411  Q
    |||||||||||||||||||| | |||| ||||||||| ||| |||  |||||| | |||||||    
T  7975781 ttcttgcttcaaaattcaccttcggcaaaagttgactacatagatttctcaagtctacctctt 7975719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 383
Target Start/End: Complemental strand, 38141122 - 38141026
Alignment:
Q  287 tacgaaaagcacttaaagcaggattgagaccatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccattggcagaagttga 383  Q
    |||||||| || ||||||| ||||||  ||||||| ||||  |||||||| ||||||||||||||||| |||||||||| || ||||| || |||||    
T  38141122 tacgaaaatcatttaaagctggattggaaccatctgcacccatacctgatggaatagtggacttcttgattcaaaattctcctttggctgatgttga 38141026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 374
Target Start/End: Original strand, 7895933 - 7895992
Alignment:
Q  315 accatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccattggc 374  Q
    ||||||| ||||  |||||||| |||||||||| |||||||||||||||||||| |||||    
T  7895933 accatctgcacccatacctgatggaatagtggatttcttgcttcaaaattcacccttggc 7895992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 7975998 - 7975912
Alignment:
Q  121 ttgcttaggttctcttcttaattcctgatctcttgaagattaatcaaccttccttgcataacttggagtcgctgaaagtgaaaatgg 207  Q
    ||||||||||||||| ||||||||||||||| ||||||| | | |  ||||| |||  ||||||| ||||  ||| |||||||||||    
T  7975998 ttgcttaggttctctacttaattcctgatctgttgaagactgacctcccttcattgggtaacttgaagtcattgagagtgaaaatgg 7975912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 456
Target Start/End: Complemental strand, 45910123 - 45909973
Alignment:
Q  306 aggattgagaccatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccattggcagaagttgacttcatcgatcgctcaaggcga 405  Q
    |||||||  |||||||||||   |||||||| ||||| ||||||||||||||| |||||| ||||  ||||||||||| ||| | ||| |||||| || |    
T  45910123 aggattggaaccatcttcactcatacctgatggaatattggacttcttgcttcgaaattcgccatcagcagaagttgatttcgtagattgctcaacgcaa 45910024  T
Q  406 cctctttaagagagatatttataatcggtttgtttattgttcccttctctg 456  Q
     ||||| |||  ||| ||||||||| ||||||||| | ||| |||||||||    
T  45910023 actcttaaagcaagagatttataattggtttgtttttcgtttccttctctg 45909973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 45869951 - 45869854
Alignment:
Q  108 cttgcatccatctttgcttaggttctcttcttaattcctgatctcttgaagattaatcaaccttccttgcataacttggagtcgctgaaagtgaaaat 205  Q
    ||||||||| || ||||||||| ||||| ||| ||||||||||| || ||||||||||  |||||||||  ||||||| ||||  |||||||| ||||    
T  45869951 cttgcatccctcgttgcttaggctctctccttcattcctgatctgttcaagattaatctcccttccttgggtaacttgaagtcattgaaagtggaaat 45869854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 381
Target Start/End: Complemental strand, 45880910 - 45880802
Alignment:
Q  273 agaagctgcaaggatacgaaaagcacttaaagcaggattgagaccatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccattg 372  Q
    ||||||||||| | || ||||| |  ||||||||||||||  ||||||| ||||  |||||||| ||||| |  ||||||||||||||||||| |||| |    
T  45880910 agaagctgcaaagttaagaaaatcgtttaaagcaggattggaaccatctgcacccatacctgatggaataattaacttcttgcttcaaaattcgccatcg 45880811  T
Q  373 gcagaagtt 381  Q
    ||| |||||    
T  45880810 gcacaagtt 45880802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 387
Target Start/End: Complemental strand, 20993694 - 20993635
Alignment:
Q  328 gtacctgatagaatagtggacttcttgcttcaaaattcaccattggcagaagttgacttc 387  Q
    ||||||||| | |||||||||||||||| ||||||||| || | ||||||||||||||||    
T  20993694 gtacctgatgggatagtggacttcttgcgtcaaaattcgccctcggcagaagttgacttc 20993635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 209
Target Start/End: Complemental strand, 2995532 - 2995444
Alignment:
Q  121 ttgcttaggttctcttcttaattcctgatctcttgaagattaatcaaccttccttgcataacttggagtcgctgaaagtgaaaatggaa 209  Q
    ||||||||||||||| |||| |||||||| | ||||||||| |||  ||||| |||  ||||||| | ||  |||||||||||||||||    
T  2995532 ttgcttaggttctctacttagttcctgatttgttgaagattgatcttccttcattgggtaacttgaactcattgaaagtgaaaatggaa 2995444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 381
Target Start/End: Complemental strand, 45855869 - 45855761
Alignment:
Q  273 agaagctgcaaggatacgaaaagcacttaaagcaggattgagaccatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccattg 372  Q
    ||||||||||| | || ||||| |  ||||||||||||||  ||||||| ||||  |||| ||| ||||| |  ||||||||||||||||||| |||| |    
T  45855869 agaagctgcaaagttaagaaaatcgtttaaagcaggattggaaccatctgcacccatacccgatggaataattaacttcttgcttcaaaattcgccatcg 45855770  T
Q  373 gcagaagtt 381  Q
    ||| |||||    
T  45855769 gcacaagtt 45855761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 7119798 - 7119867
Alignment:
Q  121 ttgcttaggttctcttcttaattcctgatctcttgaagattaatcaaccttccttgcataacttggagtc 190  Q
    ||||||||||||||| |||| |||||||| | |||||| |||| | ||||||||||  ||||||| ||||    
T  7119798 ttgcttaggttctctccttagttcctgatttattgaaggttaagctaccttccttgtgtaacttgaagtc 7119867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 368
Target Start/End: Complemental strand, 33843157 - 33843079
Alignment:
Q  287 tacgaaaagcacttaaagcaggattgagaccatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcacc 368  Q
    ||||||||||| ||||||| || ||| ||||| ||||    ||||||||| ||||||||||||||||||||||||| |||||    
T  33843157 tacgaaaagcatttaaagcgggtttgcgaccaccttcc---gtacctgatggaatagtggacttcttgcttcaaaactcacc 33843079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 368
Target Start/End: Complemental strand, 33839202 - 33839163
Alignment:
Q  329 tacctgatagaatagtggacttcttgcttcaaaattcacc 368  Q
    |||||||| ||||||||||||||||||||||||| |||||    
T  33839202 tacctgatggaatagtggacttcttgcttcaaaactcacc 33839163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University