View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2828_high_3 (Length: 386)

Name: NF2828_high_3
Description: NF2828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2828_high_3
NF2828_high_3
[»] chr1 (2 HSPs)
chr1 (14-370)||(10777601-10777958)
chr1 (14-89)||(10784384-10784458)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 14 - 370
Target Start/End: Original strand, 10777601 - 10777958
Alignment:
Q  14 agatgaacaaggatgaagtgtgtttggcttgagtgttattgcatattaaataaacattttggtgatgaatgtgttttatatatggtactagactctgttt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10777601 agatgaacaaggatgaagtgtgtttggcttgagtgttattgcatattaaataaactttttggtgatgaatgtgttttatatatggtactagactctgttt 10777700  T
Q  114 attacatgtgtttatgatatttaattaattaataatttgtctaaatttgcgggagaatataattagaattattttacagtcattaaaataaattaaacaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10777701 attacatgtgtttatgatatttaattaattaataatttgtctaaatttgcgggagaatataattagaattattttacagtcattaaaataaattaaacaa 10777800  T
Q  214 cagtaactaaacaagttgtataaatttgtcnnnnnnnnnnnnnnnnnntttgtataaattgaaatgaaaaattttgttttgtgatagctgggt-atgaga 312  Q
    ||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  10777801 cagtaactaaacaagttgtataaatttgtcaaaaaaaaaaaaaaaaaagttgtataaattgaaatgaaaaattttgttttgtgatagcagggtaatgaga 10777900  T
Q  313 cccttgatgtgatttagatgtgagctcgacaaaggttaatctggtcctatgtatcttt 370  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10777901 ccctagatgtgatttagatgtgagctcgacaaaggttaatctggtcctatgtatcttt 10777958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 10784384 - 10784458
Alignment:
Q  14 agatgaacaaggatgaagtgtgtttggcttgagtgttattgcatattaaataaacattttggtgatgaatgtgttt 89  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  10784384 agatgaacaaggatgaagtgtgtttgtcttgagtgttattgcattttaaataaac-tttttgtgatgaatgtgttt 10784458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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