View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2828_high_5 (Length: 323)
Name: NF2828_high_5
Description: NF2828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2828_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 5681010 - 5680698
Alignment:
| Q |
1 |
gcagcaatgttgatatggggtagccttttattaatggattttgactaatttatatgtaagaacaatttatacgtaccgcataatttggattttgaaatat |
100 |
Q |
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| T |
5681010 |
gcagcaatgttgatatggggtagccttttattaatggattttgactaatttatatgtaagaacaatttatacgtaccgcataatttggattttgaaatat |
5680911 |
T |
|
| Q |
101 |
ccaatttagacaatgtaacgatcagacaggaaaatcctacttatatgaatcgatgtaagccatatctatgattagtttgcactaaggtgattcagatttt |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5680910 |
ccaatttagacaatgtaactatcagacaggaaaatcctacttatatgaatcgatgtaagccatatctatgattagtctgcactaaggtgattcagatttt |
5680811 |
T |
|
| Q |
201 |
gaaatatccaatctgagtattaaatgatcagacagaaaaatccatgattagtcattcaataagggacccttatcatgcatgatgtgaaaacacgaaccta |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5680810 |
gaaatatccaatcagagtattaaatgatcagacagaaaaatccatgattagtcattcaataagggacccttatcatgcatgatgtgaaaacacgaaccta |
5680711 |
T |
|
| Q |
301 |
aaccatgtctctg |
313 |
Q |
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||||||||||||| |
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| T |
5680710 |
aaccatgtctctg |
5680698 |
T |
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