View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2828_high_8 (Length: 250)

Name: NF2828_high_8
Description: NF2828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2828_high_8
NF2828_high_8
[»] chr3 (21 HSPs)
chr3 (9-250)||(12033398-12033638)
chr3 (9-250)||(17131593-17131834)
chr3 (9-234)||(14865723-14865948)
chr3 (9-236)||(19235023-19235247)
chr3 (9-188)||(13302195-13302372)
chr3 (9-188)||(13312851-13313028)
chr3 (41-128)||(51301572-51301659)
chr3 (9-188)||(13323742-13323920)
chr3 (9-111)||(23370458-23370560)
chr3 (41-133)||(10389428-10389521)
chr3 (41-133)||(10414517-10414610)
chr3 (41-133)||(10421187-10421280)
chr3 (57-196)||(17240513-17240653)
chr3 (51-108)||(24933823-24933880)
chr3 (57-111)||(9534328-9534382)
chr3 (57-111)||(18929246-18929300)
chr3 (59-111)||(20247791-20247843)
chr3 (59-111)||(24192957-24193009)
chr3 (56-108)||(41455097-41455149)
chr3 (56-111)||(16801467-16801521)
chr3 (57-111)||(14762758-14762812)
[»] chr1 (10 HSPs)
chr1 (9-247)||(20851085-20851323)
chr1 (9-247)||(20857712-20857950)
chr1 (9-247)||(21706140-21706378)
chr1 (9-250)||(21710680-21710920)
chr1 (15-109)||(20044910-20045004)
chr1 (57-130)||(18712780-18712854)
chr1 (57-130)||(32651553-32651627)
chr1 (57-111)||(20437024-20437078)
chr1 (56-108)||(41112038-41112090)
chr1 (57-236)||(19663517-19663698)
[»] chr8 (8 HSPs)
chr8 (9-247)||(24320623-24320861)
chr8 (57-236)||(29643386-29643566)
chr8 (57-197)||(18614186-18614327)
chr8 (57-196)||(23482053-23482193)
chr8 (41-111)||(44477623-44477693)
chr8 (41-111)||(44492781-44492851)
chr8 (59-111)||(8727735-8727787)
chr8 (56-108)||(23866618-23866670)
[»] chr7 (26 HSPs)
chr7 (9-250)||(20906414-20906654)
chr7 (9-234)||(16090952-16091178)
chr7 (9-234)||(29181061-29181287)
chr7 (9-156)||(2971209-2971356)
chr7 (9-115)||(14319582-14319688)
chr7 (45-228)||(2465246-2465427)
chr7 (150-250)||(2966826-2966926)
chr7 (13-236)||(14230656-14230879)
chr7 (48-228)||(3857357-3857536)
chr7 (41-109)||(31155396-31155464)
chr7 (9-111)||(14567204-14567306)
chr7 (49-236)||(21230952-21231140)
chr7 (57-111)||(11382871-11382925)
chr7 (57-111)||(11389348-11389402)
chr7 (56-111)||(14422985-14423040)
chr7 (57-130)||(13679474-13679548)
chr7 (57-111)||(16009577-16009631)
chr7 (56-108)||(12590643-12590695)
chr7 (56-108)||(13007435-13007487)
chr7 (55-111)||(20311050-20311106)
chr7 (57-111)||(15168176-15168230)
chr7 (56-108)||(12709843-12709895)
chr7 (56-108)||(13122914-13122966)
chr7 (56-108)||(13743712-13743764)
chr7 (59-111)||(16677296-16677348)
chr7 (59-111)||(17651532-17651584)
[»] chr2 (14 HSPs)
chr2 (9-250)||(25180882-25181123)
chr2 (8-247)||(10441-10680)
chr2 (9-190)||(26885103-26885284)
chr2 (9-115)||(27207672-27207778)
chr2 (9-236)||(23168252-23168482)
chr2 (9-236)||(23579509-23579739)
chr2 (57-196)||(23265057-23265197)
chr2 (57-196)||(23280125-23280265)
chr2 (41-108)||(5706008-5706075)
chr2 (57-111)||(6483718-6483772)
chr2 (57-111)||(6487185-6487239)
chr2 (57-111)||(21908360-21908414)
chr2 (56-108)||(26583830-26583882)
chr2 (41-74)||(27366533-27366566)
[»] chr5 (21 HSPs)
chr5 (9-247)||(19236765-19237002)
chr5 (9-247)||(22461020-22461258)
chr5 (9-247)||(22467644-22467882)
chr5 (9-250)||(20772832-20773069)
chr5 (9-250)||(20781607-20781844)
chr5 (45-236)||(24929917-24930107)
chr5 (9-235)||(28909243-28909467)
chr5 (9-235)||(28945638-28945862)
chr5 (9-235)||(28895995-28896219)
chr5 (9-235)||(28924821-28925045)
chr5 (48-203)||(20820126-20820279)
chr5 (48-203)||(20827226-20827379)
chr5 (9-235)||(28889291-28889515)
chr5 (57-196)||(18407944-18408084)
chr5 (49-236)||(34829960-34830146)
chr5 (57-196)||(23111200-23111340)
chr5 (55-111)||(22438746-22438802)
chr5 (56-111)||(38144536-38144591)
chr5 (57-111)||(19512387-19512441)
chr5 (57-111)||(28370055-28370109)
chr5 (56-108)||(23528634-23528686)
[»] scaffold0053 (1 HSPs)
scaffold0053 (9-234)||(79442-79668)
[»] chr6 (25 HSPs)
chr6 (9-236)||(20007900-20008127)
chr6 (9-236)||(9099026-9099250)
chr6 (9-160)||(21364436-21364584)
chr6 (9-160)||(23968418-23968566)
chr6 (9-235)||(31252299-31252526)
chr6 (9-109)||(11288623-11288721)
chr6 (41-109)||(15458492-15458560)
chr6 (41-109)||(15465087-15465155)
chr6 (49-111)||(10986173-10986235)
chr6 (41-111)||(34639971-34640041)
chr6 (41-111)||(34646645-34646715)
chr6 (17-84)||(28288472-28288537)
chr6 (56-111)||(29614146-29614201)
chr6 (57-111)||(4477858-4477912)
chr6 (57-196)||(9187409-9187550)
chr6 (57-111)||(23839199-23839253)
chr6 (49-111)||(24512836-24512898)
chr6 (56-108)||(12168366-12168418)
chr6 (56-108)||(19287275-19287327)
chr6 (56-108)||(19785869-19785921)
chr6 (56-108)||(19878459-19878511)
chr6 (56-111)||(930095-930150)
chr6 (56-111)||(18800438-18800493)
chr6 (41-74)||(24563475-24563508)
chr6 (56-108)||(19884235-19884287)
[»] scaffold0023 (1 HSPs)
scaffold0023 (9-246)||(135304-135540)
[»] chr4 (7 HSPs)
chr4 (18-234)||(16146791-16147008)
chr4 (49-236)||(27906140-27906328)
chr4 (59-170)||(14486601-14486713)
chr4 (55-236)||(15408013-15408196)
chr4 (41-108)||(53483708-53483775)
chr4 (56-111)||(11848114-11848169)
chr4 (56-108)||(8045832-8045884)
[»] scaffold0072 (1 HSPs)
scaffold0072 (9-234)||(49922-50149)
[»] scaffold1318 (1 HSPs)
scaffold1318 (9-197)||(1865-2053)
[»] scaffold0348 (1 HSPs)
scaffold0348 (13-246)||(9201-9434)
[»] scaffold0131 (1 HSPs)
scaffold0131 (9-199)||(910-1098)
[»] scaffold1469 (1 HSPs)
scaffold1469 (41-235)||(1233-1425)
[»] scaffold0127 (1 HSPs)
scaffold0127 (9-236)||(10116-10341)
[»] scaffold0384 (1 HSPs)
scaffold0384 (15-236)||(16023-16242)
[»] scaffold0001 (1 HSPs)
scaffold0001 (9-190)||(492981-493162)
[»] scaffold0609 (1 HSPs)
scaffold0609 (41-235)||(5842-6036)
[»] scaffold0029 (3 HSPs)
scaffold0029 (45-228)||(91191-91374)
scaffold0029 (45-228)||(96917-97100)
scaffold0029 (56-109)||(111885-111938)
[»] scaffold0553 (2 HSPs)
scaffold0553 (9-111)||(10148-10250)
scaffold0553 (15-84)||(11042-11111)
[»] scaffold0544 (1 HSPs)
scaffold0544 (9-111)||(1478-1580)
[»] scaffold0261 (1 HSPs)
scaffold0261 (49-236)||(23562-23750)
[»] scaffold0720 (1 HSPs)
scaffold0720 (13-236)||(3359-3582)
[»] scaffold0249 (1 HSPs)
scaffold0249 (41-133)||(13879-13973)
[»] scaffold0034 (1 HSPs)
scaffold0034 (49-236)||(73159-73347)
[»] scaffold0183 (1 HSPs)
scaffold0183 (45-109)||(6-70)
[»] scaffold0107 (1 HSPs)
scaffold0107 (49-236)||(40524-40713)
[»] scaffold0453 (1 HSPs)
scaffold0453 (52-236)||(10546-10730)
[»] scaffold0222 (1 HSPs)
scaffold0222 (57-196)||(16735-16875)
[»] scaffold0019 (1 HSPs)
scaffold0019 (55-236)||(135347-135530)
[»] scaffold0026 (2 HSPs)
scaffold0026 (41-111)||(111686-111756)
scaffold0026 (56-111)||(11850-11905)
[»] scaffold0146 (1 HSPs)
scaffold0146 (57-196)||(13547-13687)
[»] scaffold0004 (1 HSPs)
scaffold0004 (57-130)||(116877-116951)
[»] scaffold2054 (1 HSPs)
scaffold2054 (56-109)||(717-770)
[»] scaffold0461 (1 HSPs)
scaffold0461 (57-196)||(8-148)
[»] scaffold0020 (1 HSPs)
scaffold0020 (57-130)||(101928-102002)
[»] scaffold1461 (1 HSPs)
scaffold1461 (57-164)||(1485-1592)
[»] scaffold0924 (1 HSPs)
scaffold0924 (56-111)||(750-805)
[»] scaffold0247 (1 HSPs)
scaffold0247 (56-111)||(11342-11397)
[»] scaffold0154 (1 HSPs)
scaffold0154 (56-111)||(30858-30913)
[»] scaffold0129 (1 HSPs)
scaffold0129 (41-108)||(45259-45326)
[»] scaffold0099 (1 HSPs)
scaffold0099 (58-236)||(12831-13019)
[»] scaffold0317 (1 HSPs)
scaffold0317 (57-130)||(1367-1441)
[»] scaffold0235 (1 HSPs)
scaffold0235 (49-196)||(22585-22733)
[»] scaffold0310 (1 HSPs)
scaffold0310 (55-111)||(17644-17700)
[»] scaffold0025 (1 HSPs)
scaffold0025 (59-111)||(14398-14450)
[»] scaffold0456 (2 HSPs)
scaffold0456 (56-111)||(932-987)
scaffold0456 (56-111)||(8077-8132)
[»] scaffold0124 (1 HSPs)
scaffold0124 (57-236)||(34276-34457)
[»] scaffold0090 (1 HSPs)
scaffold0090 (56-111)||(18170-18225)
[»] scaffold0483 (1 HSPs)
scaffold0483 (57-172)||(11021-11137)
[»] scaffold1773 (1 HSPs)
scaffold1773 (47-108)||(1181-1242)
[»] scaffold0796 (2 HSPs)
scaffold0796 (15-108)||(1691-1784)
scaffold0796 (15-108)||(5714-5807)
[»] scaffold0117 (2 HSPs)
scaffold0117 (56-109)||(1897-1950)
scaffold0117 (56-109)||(8574-8627)
[»] scaffold0815 (1 HSPs)
scaffold0815 (119-171)||(1389-1441)
[»] scaffold0058 (1 HSPs)
scaffold0058 (56-108)||(294-346)
[»] scaffold0006 (1 HSPs)
scaffold0006 (56-108)||(50182-50234)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 12033398 - 12033638
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12033398 gagaagaacttaggaactgatttgatgtgct-tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 12033496  T
Q  109 attaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttact 208  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12033497 attaatcaattgaactgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttgtact 12033596  T
Q  209 gtgatgtttagtatgatttcttaatctaggttattgatgttg 250  Q
     ||||||||||||||||||||||||||| ||| |||||||||    
T  12033597 ttgatgtttagtatgatttcttaatctatgttgttgatgttg 12033638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 17131834 - 17131593
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17131834 gagaagaacttaggaactgatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 17131735  T
Q  109 attaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttact 208  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  17131734 attaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtataaggatcaggtttataatgttgtact 17131635  T
Q  209 gtgatgtttagtatgatttcttaatctaggttattgatgttg 250  Q
     ||||||||||||||||||||||||||| ||| |||||||||    
T  17131634 ttgatgtttagtatgatttcttaatctatgttgttgatgttg 17131593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 14865948 - 14865723
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14865948 gagaagaacttaggaactgatttgctgtgctatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaa 14865849  T
Q  109 attaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttact 208  Q
    ||||||||||| || |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||    
T  14865848 attaatcaattaaactgttcttaaggtaaaattgggaaaataatggttaatgatgattttgaaagaaaaggtgtaagaagcaggtttataatgttgtact 14865749  T
Q  209 gtgatgtttagtatgatttcttaatc 234  Q
      |||| |||||||||||||||||||    
T  14865748 tggatgattagtatgatttcttaatc 14865723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 19235023 - 19235247
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctg-aa 107  Q
    ||||||| |||||||| ||||||||||   |  || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||    
T  19235023 gagaagagcttaggaattgatttgctgcact--ttatctttgcaattctaaggtaagggtgggattatctttcaatagttataatatatgatttctgaaa 19235120  T
Q  108 aattaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttac 207  Q
    |||||||||||| || |||||||||||||||||||||||||| |||||||||||||||| || ||||||| || |||||||||||||||||||||| ||     
T  19235121 aattaatcaatttaactgttcttaaggtaaaattgggaaatttagggttaatgatgattctg-aagaaaatgtgtaagaatcaggtttataatgttgta- 19235218  T
Q  208 tgtgatgtttagtatgatttcttaatcta 236  Q
    | ||||| ||||||||||||| |||||||    
T  19235219 tttgatgattagtatgatttcctaatcta 19235247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 13302195 - 13302372
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||| |||| ||||||||||||||||||| | ||| |||   ||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  13302195 gagatgaacctaggaactgatttgctgtgttttttttcta--caattctaaggtaagggtgagattatctttcaataatcataatatgtaatttctgaaa 13302292  T
Q  109 attaatcaattgaattgttctt-aaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaat 188  Q
    ||||||||| || ||||||||| ||| ||||| |||| |||| |||||| ||||||| || ||||| || ||| |||||||    
T  13302293 attaatcaaatgcattgttcttgaagataaaa-tggggaatttagggttgatgatgacttcgaaaggaatggtgtaagaat 13302372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 13312851 - 13313028
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||| |||| ||||||||||||||||||| | ||| |||   ||||||||||||||||||| ||||||||||||||| ||||||||| |||||| |||||    
T  13312851 gagatgaacctaggaactgatttgctgtgttttttttcta--caattctaaggtaagggtgagattatctttcaataatcataatatgtaatttttgaaa 13312948  T
Q  109 attaatcaattgaattgttctt-aaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaat 188  Q
    ||||||||| || ||||||||| ||| |||||| ||| |||| |||||| ||||||| || ||||| || ||| |||||||    
T  13312949 attaatcaaatggattgttcttgaagataaaataggg-aatttagggttgatgatgacttcgaaaggaatggtgtaagaat 13313028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 51301659 - 51301572
Alignment:
Q  41 tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaattgttc 128  Q
    |||||||| |||||||||||||||||||| ||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  51301659 tttgtcttcgcaattctaaggtaagggtgagattatcttccaataatcataatatgtaatttctgaaaattaatcaattgaattgttc 51301572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 13323742 - 13323920
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||| |||||||||||||||||   | ||| |||   ||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  13323742 gagaagaacctaggaactgatttgctgatttttttttcta--caattctaaggtaagggtgagattatctttcaataatcataatatgtaatttctgaaa 13323839  T
Q  109 attaatc-aattgaattgttctt-aaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaat 188  Q
    ||||||| ||||  ||||||||| ||| |||||||||| |||| |||||| ||||||| || ||||| || ||| |||||||    
T  13323840 attaatcaaattagattgttcttgaagataaaattggg-aatttagggttgatgatgacttcgaaaggaatggtgtaagaat 13323920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 23370458 - 23370560
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||| ||||||||||| | ||||||| | |||||||||||||||||||||| ||||| |||||| ||||||| ||||||||||||||    
T  23370458 gagaagaacttaggaacggatttgctgtgctttttgtctatacaattctaaggtaagggtgggactatctctcaataatcataatctataatttctgaaa 23370557  T
Q  109 att 111  Q
    |||    
T  23370558 att 23370560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 10389428 - 10389521
Alignment:
Q  41 tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttcttaag 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | ||||| ||||||||||||||| ||||| |||||||| ||| |||||    
T  10389428 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaagtaatctaattgaatagtttttaag 10389521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 10414517 - 10414610
Alignment:
Q  41 tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttcttaag 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | ||||| ||||||||||||||| ||||| |||||||| ||| |||||    
T  10414517 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaagtaatctaattgaatagtttttaag 10414610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 10421187 - 10421280
Alignment:
Q  41 tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttcttaag 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | ||||| ||||||||||||||| ||||| |||||||| ||| |||||    
T  10421187 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaagtaatctaattgaatagtttttaag 10421280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 17240513 - 17240653
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt-aaggtaaaattgggaaattaaggg 154  Q
    ||||||||||||| || ||||| |||||| || ||||| |||||||||||||||| ||| ||||||||||||||| ||  ||||| | || |||| ||||    
T  17240513 taaggtaagggtgagactatctctcaataatcttaatacataatttctgaaaattgatctaattgaattgttcttgaaaataaaaattgggaatt-aggg 17240611  T
Q  155 ttaatgatgattttgaaagaaaaggtataagaatcaggttta 196  Q
    || ||| |||||||||||| || ||| ||||||||| |||||    
T  17240612 ttgatgctgattttgaaaggaatggtgtaagaatcatgttta 17240653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 24933823 - 24933880
Alignment:
Q  51 caattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||||| || ||||| |||||| ||||||| ||||||||||||||    
T  24933823 caattctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaa 24933880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 9534382 - 9534328
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  9534382 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 9534328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 18929300 - 18929246
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||||| || ||||| |||||| |||| ||||||||||||||||||||    
T  18929300 taaggtaagggtgagactatctctcaataatcatgatatataatttctgaaaatt 18929246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 20247791 - 20247843
Alignment:
Q  59 aggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  20247791 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 20247843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 24193009 - 24192957
Alignment:
Q  59 aggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  24193009 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 24192957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 41455097 - 41455149
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||||||||| || ||||| |||||| ||||||| ||||||||||||||    
T  41455097 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaa 41455149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 16801467 - 16801521
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    |||||||||||||| || ||||| |||||| |||| ||||||||||||||||||||    
T  16801467 ctaaggtaagggtgagactatctctcaataatcat-atatataatttctgaaaatt 16801521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 14762758 - 14762812
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||||| || ||||| || ||| ||||||| |||||||||||||||||    
T  14762758 taaggtaagggtgagactatctctcgataatcataatctataatttctgaaaatt 14762812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 20851085 - 20851323
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20851085 gagaagaacttaggaactgatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 20851184  T
Q  109 attaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttact 208  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| |||| ||||    
T  20851185 attaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtataaggatcaggtttatattgttgtact 20851284  T
Q  209 gtgatgtttagtatgatttcttaatctaggttattgatg 247  Q
     ||||||||||||||||||||||||||| ||| ||||||    
T  20851285 ttgatgtttagtatgatttcttaatctatgttgttgatg 20851323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 20857712 - 20857950
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20857712 gagaagaacttaggaactgatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 20857811  T
Q  109 attaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttact 208  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| |||| ||||    
T  20857812 attaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtataaggatcaggtttatattgttgtact 20857911  T
Q  209 gtgatgtttagtatgatttcttaatctaggttattgatg 247  Q
     |||||||||||||| |||||||||||| ||| ||||||    
T  20857912 ttgatgtttagtatgttttcttaatctatgttgttgatg 20857950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 21706378 - 21706140
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21706378 gagaagaacttaggaactgatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 21706279  T
Q  109 attaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttact 208  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| |||| ||||    
T  21706278 attaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtataaggatcaggtttatattgttgtact 21706179  T
Q  209 gtgatgtttagtatgatttcttaatctaggttattgatg 247  Q
     |||||||||||||| |||||||||||| ||| ||||||    
T  21706178 ttgatgtttagtatgttttcttaatctatgttgttgatg 21706140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 21710920 - 21710680
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21710920 gagaagaacttaggaactgatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 21710821  T
Q  109 attaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttact 208  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||| | |||||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  21710820 attaatcaattgaactgttcttaaggtaaaattgggaaatttagggtttaagatgattttgaaagaaaaagtataaggatcaggtttataatgttatact 21710721  T
Q  209 gtgatgtttagtatgatttcttaatctaggttattgatgttg 250  Q
     ||||||||||||||||| ||||||||| ||| |||||||||    
T  21710720 -tgatgtttagtatgattccttaatctatgttgttgatgttg 21710680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 20044910 - 20045004
Alignment:
Q  15 aacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaa 109  Q
    ||||||||| ||||||||||||| || || |   | ||||||||||||||||||||||||||| ||||||  || |||||||||| |||||||||    
T  20044910 aacttaggagctgatttgctgtgttaattcttcctacaattctaaggtaagggtgggattatccttcaatgatcttaatatataaattctgaaaa 20045004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 18712854 - 18712780
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt 130  Q
    ||||||| ||||| || ||||| |||||| ||||| ||||||||||||||||||| ||| |||||||||||||||    
T  18712854 taaggtatgggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattgaattgttctt 18712780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 32651627 - 32651553
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt 130  Q
    ||||||||||||| || ||||| |||||| ||||| ||||||||||||||||||| ||| |||||| ||||||||    
T  32651627 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattgagttgttctt 32651553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 20437024 - 20437078
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  20437024 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 20437078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 41112090 - 41112038
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||||||||| || ||||| |||||| ||||||| ||||||||||||||    
T  41112090 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaa 41112038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 236
Target Start/End: Original strand, 19663517 - 19663698
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaat--taatcaattgaattgttcttaag-gtaaaattgggaaattaagg 153  Q
    ||||||||||||| || ||||| || ||| ||||| ||||||||||||||||||  |  | |  |||||||||||| ||  ||||| | || |||| |||    
T  19663517 taaggtaagggtgagactatctctcgataatcatagtatataatttctgaaaattgttttaacatgaattgttcttgagaataaaaattgggaatt-agg 19663615  T
Q  154 gttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtttagtatgatttcttaatcta 236  Q
    ||| ||| |||||||||||| || ||| ||||||| | |||||   |||| || | ||||||| || ||||||||||||||||    
T  19663616 gttgatgctgattttgaaaggaatggtgtaagaattatgtttaatgtgttgtaatttgatgttcagaatgatttcttaatcta 19663698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 24320623 - 24320861
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24320623 gagaagaacttaggaactgatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 24320722  T
Q  109 attaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttact 208  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| | |||||||||||| |||| ||||    
T  24320723 attaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtatagggatcaggtttatattgttgtact 24320822  T
Q  209 gtgatgtttagtatgatttcttaatctaggttattgatg 247  Q
     ||||||||||||||||||||||||||| ||| ||||||    
T  24320823 ttgatgtttagtatgatttcttaatctatgttgttgatg 24320861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 236
Target Start/End: Original strand, 29643386 - 29643566
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttc-ttaaggtaaaattgggaaattaaggg 154  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||| | ||| |||||||| | |||||||||    
T  29643386 taaggtaagggtgagattatctttcaataatcataatatgtaatttctgaaaattaatcaaattgaattgttcatgaagataaaattgag-aattaaggg 29643484  T
Q  155 ttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtttagtatgatttcttaatcta 236  Q
    || |||||||||| | ||| |  ||| |||||||  |||| ||  |||| || | || |||| |||||||||||||||||||    
T  29643485 ttgatgatgatttaggaaggattggtgtaagaattgggttaattgtgttgtaatttggtgttcagtatgatttcttaatcta 29643566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 197
Target Start/End: Complemental strand, 18614327 - 18614186
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaat-caattgaattgttctt-aaggtaaaattgggaaattaaggg 154  Q
    ||||||||||||| || ||||| |||||| |||| |||||||||||||||||||| || |||||||||||||||| ||| |||||||| | ||||| ||     
T  18614327 taaggtaagggtgagactatctctcaataatcatgatatataatttctgaaaattgatccaattgaattgttcttgaagataaaattgag-aattagggt 18614229  T
Q  155 ttaatgatgattttgaaagaaaaggtataagaatcaggtttat 197  Q
    || ||| |||||| ||||| || ||| ||||||| | ||||||    
T  18614228 tttatgctgatttagaaaggaatggtgtaagaattatgtttat 18614186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 23482053 - 23482193
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt-aaggtaaaattgggaaattaaggg 154  Q
    ||||||||||||| || ||||| |||||| ||||| ||||||||||||||||||| ||| ||||||||||||||| ||  ||||| | || |||| ||||    
T  23482053 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattgaattgttcttgaaaataaaaattgggaatt-aggg 23482151  T
Q  155 ttaatgatgattttgaaagaaaaggtataagaatcaggttta 196  Q
    || ||| ||||||||||||  | ||| ||||||||| |||||    
T  23482152 ttgatgctgattttgaaagggatggtgtaagaatcatgttta 23482193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 44477693 - 44477623
Alignment:
Q  41 tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||  ||||||||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  44477693 tttgtcttcacaattctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 44477623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 44492851 - 44492781
Alignment:
Q  41 tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||  ||||||||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  44492851 tttgtcttcacaattctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 44492781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 8727735 - 8727787
Alignment:
Q  59 aggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||| |||||||  |||||| ||||||| |||||||||||||||||    
T  8727735 aggtaagggtgagattatccctcaataatcataatctataatttctgaaaatt 8727787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 23866670 - 23866618
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||||||||| || ||||| |||||| ||||||| ||||||| ||||||    
T  23866670 ctaaggtaagggtgagactatctctcaataatcataatttataattcctgaaa 23866618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 20906414 - 20906654
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20906414 gagaagaacttaggaacggatttgctgagctatttgtccttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 20906513  T
Q  109 attaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttact 208  Q
    |||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  20906514 attaatcaattgaactattcttaaggtaaaattggg-aattaagggttaatgatgattttgaaagaaaaggtataagaatcaagtttataatgttgtact 20906612  T
Q  209 gtgatgtttagtatgatttcttaatctaggttattgatgttg 250  Q
     ||||||||||||||||||||||||||| ||| |||||||||    
T  20906613 ttgatgtttagtatgatttcttaatctatgttgttgatgttg 20906654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 16091178 - 16090952
Alignment:
Q  9 gagaagaacttaggaactgattt-gctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaa 107  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16091178 gagaagaacttaggaactgattttgctgtgctatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 16091079  T
Q  108 aattaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttac 207  Q
    | |||||||||| || ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||     
T  16091078 agttaatcaattaaactgttcctaaggtaaaattgggaaaataagggttaatgatgattttgaaagaaaaggtgtaagaatcaggtttataatgttgtat 16090979  T
Q  208 tgtgatgtttagtatgatttcttaatc 234  Q
    |   ||| |||||||||||||||||||    
T  16090978 ttgaatgattagtatgatttcttaatc 16090952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 29181061 - 29181287
Alignment:
Q  9 gagaagaacttaggaactgattt-gctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaa 107  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29181061 gagaagaacttaggaactgattttgctgtgctatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 29181160  T
Q  108 aattaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttac 207  Q
    |||||||||||| || | |||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||     
T  29181161 aattaatcaattaaactattcttaaggtaaaatttggaaaataagggttaatgatgattttgaaagaaaaggtgtaagaatcaggcttataatgttgtat 29181260  T
Q  208 tgtgatgtttagtatgatttcttaatc 234  Q
    |   ||| |||||||||||||||||||    
T  29181261 ttgaatgattagtatgatttcttaatc 29181287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 2971356 - 2971209
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2971356 gagaagaacttaggaactgatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatttataatttctgaaa 2971257  T
Q  109 attaatcaattgaattgttcttaaggtaaaattgggaaattaagggtt 156  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||    
T  2971256 attaatcaattgaactgttcttaaggtaaaattgggaagataagggtt 2971209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 14319582 - 14319688
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||  |  |||| ||||||||||||||    
T  14319582 gagaagaacttaggaacggatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatgattttaatgtataatttctgaaa 14319681  T
Q  109 attaatc 115  Q
    |||||||    
T  14319682 attaatc 14319688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 45 - 228
Target Start/End: Complemental strand, 2465427 - 2465246
Alignment:
Q  45 tctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaattgttcttaaggt-aaaattgg 143  Q
    ||||||||||||||||||||||||||||| ||| ||||||| | ||||||||| ||||||||||||||| ||||| || |||| ||| ||| ||||||||    
T  2465427 tctttgcaattctaaggtaagggtgggatcatccttcaataatgataatatatgatttctgaaaattaagcaatttaactgtttttatggtaaaaattgg 2465328  T
Q  144 gaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtttagtatgatttc 228  Q
    |||||| ||||||||||   |||||| ||||||| || ||||| | |||||||||||||| || | ||||| ||| |||||||||    
T  2465327 gaaatt-agggttaatggcaattttg-aagaaaatgtgtaagatttaggtttataatgttata-tttgatgattaatatgatttc 2465246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 2966926 - 2966826
Alignment:
Q  150 aagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtttagtatgatttcttaatctaggttattgatgtt 249  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||| ||||| ||||||||||||||||||| | ||| ||||||||    
T  2966926 aagggttaatgatgtttttgaaagaaaaggtataagaatcaggtttttaatgttgtactttgatgattagtatgatttcttaatccatgttgttgatgtt 2966827  T
Q  250 g 250  Q
    |    
T  2966826 g 2966826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 14230879 - 14230656
Alignment:
Q  13 agaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatta 112  Q
    ||||||||||||| ||||||  ||| | ||||||||||||||||||||||||||||||||||||||||||||     |||| ||||||||||||||||||    
T  14230879 agaacttaggaacggatttgtcgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatgaatttaatgtataatttctgaaaatta 14230780  T
Q  113 atc-aattgaattgttctt-aaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgt 210  Q
    ||| ||  |||| |||||| ||| |||||||| | ||||| ||  | |   |||||||||||| |||||| ||||||||| |||||  ||||| || | |    
T  14230779 atctaaaagaatagttcttgaagataaaattgag-aattagggtatgagactgattttgaaag-aaaggtgtaagaatcatgtttaatatgttgtaattt 14230682  T
Q  211 gatgtttagtatgatttcttaatcta 236  Q
    ||| ||  ||||||||||||||||||    
T  14230681 gatattctgtatgatttcttaatcta 14230656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 228
Target Start/End: Original strand, 3857357 - 3857536
Alignment:
Q  48 ttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaattgttcttaaggt---aaaattggg 144  Q
    |||||||||||||||||||||||||| ||||| ||||| | ||||||||| ||||||||||||||| ||||| || |||| ||| |||   |||||||||    
T  3857357 ttgcaattctaaggtaagggtgggatcatctt-caataatgataatatatgatttctgaaaattaagcaatttaactgtttttatggtaaaaaaattggg 3857455  T
Q  145 aaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtttagtatgatttc 228  Q
    ||||| ||||||||||   |||||| ||||||| || ||||| | |||||||||||||| || | ||||| ||| |||||||||    
T  3857456 aaatt-agggttaatggcaattttg-aagaaaatgtgtaagatttaggtttataatgttgta-tttgatgattaatatgatttc 3857536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 31155464 - 31155396
Alignment:
Q  41 tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  31155464 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 31155396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 14567306 - 14567204
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||| ||||||||||| | ||||||| | ||||||||||||||||||| |  || | ||||||  | |||||||||  |||||||||    
T  14567306 gagaagaacttaggaacggatttgctgtgctttttgtctctacaattctaaggtaagggtgaggctaaccttcaatgattataatatatggtttctgaaa 14567207  T
Q  109 att 111  Q
    |||    
T  14567206 att 14567204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 236
Target Start/End: Original strand, 21230952 - 21231140
Alignment:
Q  49 tgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaat--taatcaattgaattgttcttaaggtaaaattgggaa 146  Q
    ||||| ||||||||||||||| || ||||| |||||| ||||| ||||||||||||||||||  |  | |  |||||||||||| || ||||| | || |    
T  21230952 tgcaaatctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgttttaacatgaattgttcttgagataaaaattggga 21231051  T
Q  147 attaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtttagtatgatttcttaatcta 236  Q
    ||| |||||| ||| ||||| |||||| || ||| ||||||||| |||||   |||| || | || |||| || ||||||||||||||||    
T  21231052 att-agggttgatgctgattctgaaaggaatggtgtaagaatcatgtttaatgtgttgtaatttggtgttcagaatgatttcttaatcta 21231140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 11382871 - 11382925
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||||| || ||||| |||||| |||||||||||||||||||||||||    
T  11382871 taaggtaagggtgagactatctctcaataatcataatatataatttctgaaaatt 11382925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 11389348 - 11389402
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||||| || ||||| |||||| |||||||||||||||||||||||||    
T  11389348 taaggtaagggtgagactatctctcaataatcataatatataatttctgaaaatt 11389402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 14423040 - 14422985
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  14423040 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 14422985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 13679548 - 13679474
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt 130  Q
    ||||||||||||| || |||||||||||  |||| ||||||||||| |||||||| ||| |||| ||||||||||    
T  13679548 taaggtaagggtgagactatctttcaatgatcatgatatataatttttgaaaattgatctaattaaattgttctt 13679474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 16009631 - 16009577
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  16009631 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 16009577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 12590643 - 12590695
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||||||||| || ||||| |||||| ||||||| ||||||||||||||    
T  12590643 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaa 12590695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 13007487 - 13007435
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||||||||| || ||||| |||||| ||||||| ||||||||||||||    
T  13007487 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaa 13007435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 20311050 - 20311106
Alignment:
Q  55 tctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||||||| || ||||| |||||| ||||||  |||||||||||||||||    
T  20311050 tctaaggtaagggtgagactatctctcaataatcataacgtataatttctgaaaatt 20311106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 15168230 - 15168176
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||||| || ||||| || ||| ||||||| |||||||||||||||||    
T  15168230 taaggtaagggtgagactatctctcgataatcataatctataatttctgaaaatt 15168176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 12709843 - 12709895
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||||||||| || ||||| |||||| ||||||| ||||||| ||||||    
T  12709843 ctaaggtaagggtgagactatctctcaataatcataatttataattcctgaaa 12709895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 13122914 - 13122966
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||||||||| || ||||| |||||| ||||||| ||||||| ||||||    
T  13122914 ctaaggtaagggtgagactatctctcaataatcataatttataattcctgaaa 13122966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 13743764 - 13743712
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||||||||| || ||||| |||||| ||||||| ||||||| ||||||    
T  13743764 ctaaggtaagggtgagactatctctcaataatcataatttataattcctgaaa 13743712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 16677348 - 16677296
Alignment:
Q  59 aggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||| || ||||| |||||| ||||||| |||||||||| ||||||    
T  16677348 aggtaagggtgagactatctctcaataatcataatctataatttctaaaaatt 16677296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 17651584 - 17651532
Alignment:
Q  59 aggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||| || ||||| |||||| ||||||| |||||||||| ||||||    
T  17651584 aggtaagggtgagactatctctcaataatcataatctataatttctaaaaatt 17651532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 25180882 - 25181123
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25180882 gagaagaacttaggaactgatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 25180981  T
Q  109 attaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttact 208  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||   |||||||||||| | || ||||    
T  25180982 attaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtatattgatcaggtttatatttttgtact 25181081  T
Q  209 gtgatgtttagtatgatttcttaatctaggttattgatgttg 250  Q
     ||||||||||||||||||||||||||| ||| |||||||||    
T  25181082 ttgatgtttagtatgatttcttaatctatgttgttgatgttg 25181123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 10680 - 10441
Alignment:
Q  8 tgagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaa 107  Q
    ||||||| |||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10680 tgagaaggacttaggaactgatttgctgtgctttttgtctttgaaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaa 10581  T
Q  108 aattaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttac 207  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| | || ||||||||| |||| |||    
T  10580 aattaatcaattgaattgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtatagggataaggtttatattgttgtac 10481  T
Q  208 tgtgatgtttagtatgatttcttaatctaggttattgatg 247  Q
    | ||||||||||||||||||||||||||| ||| ||||||    
T  10480 tttgatgtttagtatgatttcttaatctatgttgttgatg 10441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 26885284 - 26885103
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||| |||||| |||| | ||||||| ||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||    
T  26885284 gagaagaacttaggaacggatttgatgtgctttttgtctctgcaattctaaggtaagggtgggattatctttcaataatc-taatgtataatttctgaaa 26885186  T
Q  109 attaatc-aattgaattgttctt-aaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatca 190  Q
    ||||||| ||| |||| ||||||  ||  ||||||| | ||||| ||  ||||| | ||||||||||||||||| |||||||||    
T  26885185 attaatctaatggaatagttcttggagaaaaaattgag-aattagggtataatgctaattttgaaagaaaaggtgtaagaatca 26885103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 27207672 - 27207778
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||  |  |||| ||||||||||||||    
T  27207672 gagaagaacttaggaacggatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatgattttaatgtataatttctgaaa 27207771  T
Q  109 attaatc 115  Q
    |||||||    
T  27207772 attaatc 27207778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 23168252 - 23168482
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctg-aa 107  Q
    |||||||||||||| || | ||||||||| | ||||| | |||||||||||||||||||||||||||||||||| |  ||||||| ||||||||||| ||    
T  23168252 gagaagaacttagggacggttttgctgtgct-tttgtttctgcaattctaaggtaagggtgggattatctttcattgatcataatgtataatttctgaaa 23168350  T
Q  108 aattaatc-aattgaattgttcttaaggt---aaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgtt 203  Q
    |||||||| ||| |||| ||| | ||| |   ||||||| | ||||| ||  | ||| ||||||||||||||||||| ||||| ||| |||||   ||||    
T  23168351 aattaatctaatagaatagttttgaagataaaaaaattgag-aattagggtatgatgctgattttgaaagaaaaggtgtaagagtcatgtttaatgtgtt 23168449  T
Q  204 ttactgtgatgtttagtatgatttcttaatcta 236  Q
     || | ||||||| |||||||||||||||||||    
T  23168450 gtaatttgatgttcagtatgatttcttaatcta 23168482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 23579509 - 23579739
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctg-aa 107  Q
    |||||||||||||| || | ||||||||| | ||||| | |||||||||||||||||||||||||||||||||| |  ||||||| ||||||||||| ||    
T  23579509 gagaagaacttagggacggttttgctgtgct-tttgtttctgcaattctaaggtaagggtgggattatctttcattgatcataatgtataatttctgaaa 23579607  T
Q  108 aattaatc-aattgaattgttcttaaggt---aaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgtt 203  Q
    |||||||| ||| |||| ||| | ||| |   ||||||| | ||||| ||  | ||| ||||||||||||||||||| ||||| ||| |||||   ||||    
T  23579608 aattaatctaatagaatagttttgaagataaaaaaattgag-aattagggtatgatgctgattttgaaagaaaaggtgtaagagtcatgtttaatgtgtt 23579706  T
Q  204 ttactgtgatgtttagtatgatttcttaatcta 236  Q
     || | ||||||| |||||||||||||||||||    
T  23579707 gtaatttgatgttcagtatgatttcttaatcta 23579739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 196
Target Start/End: Complemental strand, 23265197 - 23265057
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt-aaggtaaaattgggaaattaaggg 154  Q
    ||||||||||||| || ||||| |||||| ||||| ||||||||||||||||||| ||| ||||||||||||||| ||  ||||| | |  |||| ||||    
T  23265197 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattgaattgttcttgaaaataaaaattgagaatt-aggg 23265099  T
Q  155 ttaatgatgattttgaaagaaaaggtataagaatcaggttta 196  Q
    || ||| |||||||||||| || ||| ||||||||| |||||    
T  23265098 ttgatgctgattttgaaaggaatggtgtaagaatcatgttta 23265057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 196
Target Start/End: Complemental strand, 23280265 - 23280125
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt-aaggtaaaattgggaaattaaggg 154  Q
    ||||||||||||| || ||||| |||||| ||||| ||||||||||||||||||| ||| ||||||||||||||| ||  ||||| | |  |||| ||||    
T  23280265 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattgaattgttcttgaaaataaaaattgagaatt-aggg 23280167  T
Q  155 ttaatgatgattttgaaagaaaaggtataagaatcaggttta 196  Q
    || ||| |||||||||||| || ||| ||||||||| |||||    
T  23280166 ttgatgctgattttgaaaggaatggtgtaagaatcatgttta 23280125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 5706008 - 5706075
Alignment:
Q  41 tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||| |||||||||||||||||||| || ||||| ||| || ||||||| ||||||| ||||||    
T  5706008 tttgtcttcgcaattctaaggtaagggtgagactatctctcattaatcataatctataattcctgaaa 5706075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 6483772 - 6483718
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  6483772 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 6483718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 6487239 - 6487185
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  6487239 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 6487185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 21908414 - 21908360
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||||| || ||||| |||||| |||| ||||||||||||||||||||    
T  21908414 taaggtaagggtgagactatctctcaataatcatgatatataatttctgaaaatt 21908360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 26583882 - 26583830
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||||||||| || ||||| |||||| ||||||| ||||||||||||||    
T  26583882 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaa 26583830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 27366533 - 27366566
Alignment:
Q  41 tttgtctttgcaattctaaggtaagggtgggatt 74  Q
    ||||||||||||||||||||||||||||| ||||    
T  27366533 tttgtctttgcaattctaaggtaagggtgagatt 27366566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 19237002 - 19236765
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19237002 gagaagaacttaggaactgatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 19236903  T
Q  109 attaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttact 208  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| |||| ||||    
T  19236902 attaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtataaggatcaggtttatattgttgtact 19236803  T
Q  209 gtgatgtttagtatgatttcttaatctaggttattgatg 247  Q
     ||| ||||||||||  ||||||||||| ||| ||||||    
T  19236802 ttga-gtttagtatgtgttcttaatctatgttgttgatg 19236765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 22461258 - 22461020
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctg-aa 107  Q
    |||||||||||| ||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22461258 gagaagaacttaagaactgatttgctgtgccttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 22461159  T
Q  108 aattaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttac 207  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||||| |||  |||    
T  22461158 aattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatga-tttgaaagaaaaggtataaggatcaggtttatattgtcgtac 22461060  T
Q  208 tgtgatgtttagtatgatttcttaatctaggttattgatg 247  Q
    | |||||||||||||| ||||||| |||| ||| ||||||    
T  22461059 tttgatgtttagtatgttttcttattctatgttgttgatg 22461020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 22467882 - 22467644
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctg-aa 107  Q
    |||||||||||| ||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22467882 gagaagaacttaagaactgatttgctgtgccttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 22467783  T
Q  108 aattaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttac 207  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||||| |||  |||    
T  22467782 aattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatga-tttgaaagaaaaggtataaggatcaggtttatattgtcgtac 22467684  T
Q  208 tgtgatgtttagtatgatttcttaatctaggttattgatg 247  Q
    | |||||||||||||| ||||||| |||| ||| ||||||    
T  22467683 tttgatgtttagtatgttttcttattctatgttgttgatg 22467644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 20773069 - 20772832
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||| |||||||| |||||||||||  |  || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  20773069 gagaagagcttaggaattgatttgctgtact--ttatctttgcaattctaaggtaagggtgggattatctttcaatagttataatatatgatttctgaaa 20772972  T
Q  109 attaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttact 208  Q
    ||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| || |||||||||||||||||||||| || |    
T  20772971 attaatcaatttaactgttcttaaggtaaaattgggaaatttagggttaatgatgattttg-aagaaaatgtgtaagaatcaggtttataatgttgta-t 20772874  T
Q  209 gtgatgtttagtatgatttcttaatctaggttattgatgttg 250  Q
     ||||| ||||||||||||| || ||||  || |||||||||    
T  20772873 ttgatgattagtatgatttcctactctatattgttgatgttg 20772832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 20781844 - 20781607
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||| |||||||| |||||||||||  |  || ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||    
T  20781844 gagaagagcttaggaattgatttgctgtact--ttatctttgcaattctaaggtaagggtgggattatctttcaataattataatatatgatttctgaaa 20781747  T
Q  109 attaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttact 208  Q
    ||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| || |||||||||||||||||||||| || |    
T  20781746 attaatcaatttaactgttcttaaggtaaaattgggaaatttagggttaatgatgattttg-aagaaaatgtgtaagaatcaggtttataatgttgta-t 20781649  T
Q  209 gtgatgtttagtatgatttcttaatctaggttattgatgttg 250  Q
     ||||| ||| ||||||||| || ||||  || |||||||||    
T  20781648 ttgatgattattatgatttcctactctatattgttgatgttg 20781607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 45 - 236
Target Start/End: Original strand, 24929917 - 24930107
Alignment:
Q  45 tctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaa-ttaatcaattgaattgttcttaaggtaaaattgg 143  Q
    ||||| |||||||||||||||||||||||||||||||||||||  |||||||| |||||| |||| |||||||||| || ||||||||||||||||||||    
T  24929917 tctttacaattctaaggtaagggtgggattatctttcaatagttctaatatatgatttctaaaaaattaatcaatttaactgttcttaaggtaaaattgg 24930016  T
Q  144 gaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtttagtatgatttcttaatcta 236  Q
    |||||| |||||||||||||||| || ||| ||| || |||||||||||||||||||||| || | ||||| ||||||||||||| |||||||    
T  24930017 gaaatttagggttaatgatgattctg-aaggaaatgtgtaagaatcaggtttataatgttgta-tttgatgattagtatgatttcctaatcta 24930107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 28909243 - 28909467
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||| |||||| |||||||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||||||    
T  28909243 gagaagaacctaggaattgatttgctgtgct-tttgtcgttgcaattctaaggtaagggtgggatcatctttcaatagtgatattatatgatttctgaaa 28909341  T
Q  109 attaatcaattgaattgttcttaaggtaaaa-ttgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttac 207  Q
    ||||| | ||| ||||||||||||||||||| |||||||| | ||| || |||||||||||||| ||||| |  ||| | |||||||||| | ||| ||     
T  28909342 attaaactatttaattgttcttaaggtaaaaattgggaaaattaggtttgatgatgattttgaa-gaaaatgcgtaaaattcaggtttatgacgttgtat 28909440  T
Q  208 tgtgatgtttagtatgatttcttaatct 235  Q
    | | ||| ||||||||||||| ||||||    
T  28909441 t-taatgattagtatgatttcctaatct 28909467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 28945638 - 28945862
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||| |||||| |||||||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||||||    
T  28945638 gagaagaacctaggaattgatttgctgtgct-tttgtcgttgcaattctaaggtaagggtgggatcatctttcaatagtgatattatatgatttctgaaa 28945736  T
Q  109 attaatcaattgaattgttcttaaggtaaaa-ttgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttac 207  Q
    ||||| | ||| ||||||||||||||||||| |||||||| | ||| || |||||||||||||| ||||| |  ||| | |||||||||| | ||| ||     
T  28945737 attaaactatttaattgttcttaaggtaaaaattgggaaaattaggtttgatgatgattttgaa-gaaaatgcgtaaaattcaggtttatgacgttgtat 28945835  T
Q  208 tgtgatgtttagtatgatttcttaatct 235  Q
    | | ||| ||||||||||||| ||||||    
T  28945836 t-taatgattagtatgatttcctaatct 28945862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 28895995 - 28896219
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||| |||||| |||||||||||| | |||| | |||||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||||||    
T  28895995 gagaagaacctaggaattgatttgctgtgct-tttgccgttgcaattctaaggtaagggtgggatcatctttcaatagtgatattatatgatttctgaaa 28896093  T
Q  109 attaatcaattgaattgttcttaaggtaaaa-ttgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttac 207  Q
    ||||| | ||| ||||||||||||||||||| |||||||| | ||| || |||||||||||||| ||||| |  ||| | |||||||||| | ||| ||     
T  28896094 attaaactatttaattgttcttaaggtaaaaattgggaaaattaggtttgatgatgattttgaa-gaaaatgcgtaaaattcaggtttatgacgttgtat 28896192  T
Q  208 tgtgatgtttagtatgatttcttaatct 235  Q
    | | ||| ||||||||||||| ||||||    
T  28896193 t-taatgattagtatgatttcctaatct 28896219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 28924821 - 28925045
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||| |||||| |||||||||||| | |||| | |||||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||||||    
T  28924821 gagaagaacctaggaattgatttgctgtgct-tttgccgttgcaattctaaggtaagggtgggatcatctttcaatagtgatattatatgatttctgaaa 28924919  T
Q  109 attaatcaattgaattgttcttaaggtaaaa-ttgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttac 207  Q
    ||||| | ||| ||||||||||||||||||| |||||||| | ||| || |||||||||||||| ||||| |  ||| | |||||||||| | ||| ||     
T  28924920 attaaactatttaattgttcttaaggtaaaaattgggaaaattaggtttgatgatgattttgaa-gaaaatgcgtaaaattcaggtttatgacgttgtat 28925018  T
Q  208 tgtgatgtttagtatgatttcttaatct 235  Q
    | | ||| ||||||||||||| ||||||    
T  28925019 t-taatgattagtatgatttcctaatct 28925045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 203
Target Start/End: Complemental strand, 20820279 - 20820126
Alignment:
Q  48 ttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaattgttcttaaggtaaaattgggaaa 147  Q
    |||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||  |||||  |||| ||  ||||||||||||||||||| |||    
T  20820279 ttgcaattctaaggtaagggtgggatcatctttcaatagtgttaatatataatttctgatgattaagtaattcaaccgttcttaaggtaaaattggaaaa 20820180  T
Q  148 ttaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgtt 203  Q
    || ||||||||||||||||||| |||| || | |||||| ||||||||||||||||    
T  20820179 tt-agggttaatgatgattttg-aagagaatgcataagattcaggtttataatgtt 20820126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 203
Target Start/End: Complemental strand, 20827379 - 20827226
Alignment:
Q  48 ttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaattgttcttaaggtaaaattgggaaa 147  Q
    |||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||  |||||  |||| ||  ||||||||||||||||||| |||    
T  20827379 ttgcaattctaaggtaagggtgggatcatctttcaatagtgttaatatataatttctgatgattaagtaattcaaccgttcttaaggtaaaattggaaaa 20827280  T
Q  148 ttaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgtt 203  Q
    || ||||||||||||||||||| |||| || | |||||| ||||||||||||||||    
T  20827279 tt-agggttaatgatgattttg-aagagaatgcataagattcaggtttataatgtt 20827226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 28889291 - 28889515
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||| |||||| ||||||||  || | |||| | |||||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||||||    
T  28889291 gagaagaacctaggaattgatttgcattgct-tttgccgttgcaattctaaggtaagggtgggatcatctttcaatagtgatattatatgatttctgaaa 28889389  T
Q  109 attaatcaattgaattgttcttaaggtaaaa-ttgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttac 207  Q
    ||||| | ||| ||||||||||||||||||| |||||||| | ||| || |||||||||||||| ||||| |  ||| | |||||||||| | ||| ||     
T  28889390 attaaactatttaattgttcttaaggtaaaaattgggaaaattaggtttgatgatgattttgaa-gaaaatgcgtaaaattcaggtttatgacgttgtat 28889488  T
Q  208 tgtgatgtttagtatgatttcttaatct 235  Q
    | | ||| ||||||||||||| ||||||    
T  28889489 t-taatgattagtatgatttcctaatct 28889515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 18407944 - 18408084
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt-aaggtaaaattgggaaattaaggg 154  Q
    ||||||||||||| || ||||| |||||| ||||||||||||||||||||||||| ||| ||||||||||||||| ||  ||||| | || |||| ||||    
T  18407944 taaggtaagggtgagactatctctcaataatcataatatataatttctgaaaattgatctaattgaattgttcttgaaaataaaaattgggaatt-aggg 18408042  T
Q  155 ttaatgatgattttgaaagaaaaggtataagaatcaggttta 196  Q
    || ||| |||||||||||| || ||| ||||||||| |||||    
T  18408043 ttgatgctgattttgaaaggaatggtgtaagaatcatgttta 18408084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 236
Target Start/End: Complemental strand, 34830146 - 34829960
Alignment:
Q  49 tgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt-aaggtaaaattgggaa 146  Q
    ||||||||||||||||||||||||||||||||||||| |  |||| |||||||||||||||| |||| ||| |||| |||||| ||| |||||||| | |    
T  34830146 tgcaattctaaggtaagggtgggattatctttcaataat-ttaatgtataatttctgaaaatcaatctaatagaatagttcttgaagataaaattgag-a 34830049  T
Q  147 attaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtttagtatgatttcttaatcta 236  Q
    |||| ||  | ||| |||||||||||| |||| | ||||||||| |||||   |||| || | ||||| | |||||||||||||||||||    
T  34830048 attagggtatgatgctgattttgaaag-aaagatgtaagaatcatgtttaatgtgttgtaatttgatgatcagtatgatttcttaatcta 34829960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 23111200 - 23111340
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt-aaggtaaaattgggaaattaaggg 154  Q
    ||||||||||||| || ||||| |||||| ||||| ||||||||||||||||||| ||| ||||||||||||||| ||  ||||| | || |||| ||||    
T  23111200 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattgaattgttcttgaaaataaaaattgggaatt-aggg 23111298  T
Q  155 ttaatgatgattttgaaagaaaaggtataagaatcaggttta 196  Q
    || ||| ||||||||||||  | ||| ||||||||| |||||    
T  23111299 ttgatgctgattttgaaagggatggtgtaagaatcatgttta 23111340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 22438746 - 22438802
Alignment:
Q  55 tctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  22438746 tctaaggtaagggtgagactatctctcaataatcataatgtataatttctgaaaatt 22438802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 38144536 - 38144591
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  38144536 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 38144591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 19512441 - 19512387
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  19512441 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 19512387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 28370055 - 28370109
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  28370055 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 28370109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 23528686 - 23528634
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||||||||| || ||||| |||||| ||||||| ||||||||||||||    
T  23528686 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaa 23528634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 79442 - 79668
Alignment:
Q  9 gagaagaacttaggaactgattt-gctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaa 107  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  79442 gagaagaacttaggaactgattttgctgtgctatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 79541  T
Q  108 aattaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttac 207  Q
    |||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||     
T  79542 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatgattttgaaagaaaaggtgtaagaatcaggtttataatgttgtat 79641  T
Q  208 tgtgatgtttagtatgatttcttaatc 234  Q
    |   ||| |||||||||||||||||||    
T  79642 ttgaatgattagtatgatttcttaatc 79668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 20007900 - 20008127
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  20007900 gagaagaacttaggaactcatttgctgtgct-tttgtctttgcaattctaaggtaagggtgggatcatctttcaatagtcataatatataatttatgaaa 20007998  T
Q  109 a-ttaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttac 207  Q
    | ||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| |||| |||    
T  20007999 aattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtataaggatcaggtttatattgttgtac 20008098  T
Q  208 tgtgatgtttagtatgatttcttaatcta 236  Q
    | |||||||||||||| ||||||||||||    
T  20008099 tttgatgtttagtatgttttcttaatcta 20008127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 9099026 - 9099250
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctg-aa 107  Q
    ||||||| |||||||| ||||||||||   |  || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||    
T  9099026 gagaagagcttaggaattgatttgctgcact--ttatctttgcaattctaaggtaagggtgggattatctttcaatagttataatatatgatttctgaaa 9099123  T
Q  108 aattaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttac 207  Q
    |||||||||||| || |||||||||||||||||||||||||| |||||||||||||||| || ||||||| || |||||||||||||||||||||| ||     
T  9099124 aattaatcaatttaactgttcttaaggtaaaattgggaaatttagggttaatgatgattctg-aagaaaatgtgtaagaatcaggtttataatgttgta- 9099221  T
Q  208 tgtgatgtttagtatgatttcttaatcta 236  Q
    | ||||| ||||||||||||| |||||||    
T  9099222 tttgatgattagtatgatttcctaatcta 9099250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 21364436 - 21364584
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||| |||||| || ||||||||| | |||||||||||||||| |||||||||||||||||||| |||| || | ||||||||| ||||||||||    
T  21364436 gagaagaacctaggaattgttttgctgtgct-tttgtctttgcaattcaaaggtaagggtgggattatccttcagtaatgataatatatgatttctgaaa 21364534  T
Q  109 attaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatg 160  Q
    ||||| ||||| || |||| ||| ||||||||||||||||| ||||||||||    
T  21364535 attaagcaatttaactgtt-ttatggtaaaattgggaaatt-agggttaatg 21364584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 23968418 - 23968566
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||| |||||| || ||||||||| | |||||||||||||||| |||||||||||||||||||| |||| || | ||||||||| ||||||||||    
T  23968418 gagaagaacctaggaattgttttgctgtgct-tttgtctttgcaattcaaaggtaagggtgggattatccttcagtaatgataatatatgatttctgaaa 23968516  T
Q  109 attaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatg 160  Q
    ||||| ||||| || |||| ||| ||||||||||||||||| ||||||||||    
T  23968517 attaagcaatttaactgtt-ttatggtaaaattgggaaatt-agggttaatg 23968566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 31252526 - 31252299
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtat--ttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctga 106  Q
    ||||||||||||||||| |||| |||||| | |  |||||||||||||||||||||||||||| |||||||||| |||  | ||||||||||||||||||    
T  31252526 gagaagaacttaggaaccgatt-gctgtgttttctttgtctttgcaattctaaggtaagggtgagattatcttttaatgattataatatataatttctga 31252428  T
Q  107 aaattaatc-aattgaattgttctt-aaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttt 204  Q
    ||||||||| |||||||| |||||| ||| |||||||| | ||||| ||  | | | |||||||||||| |||||| ||||||| | |||||   ||||     
T  31252427 aaattaatctaattgaatagttcttgaagataaaattgag-aattagggtatgaggctgattttgaaag-aaaggtgtaagaattatgtttaacgtgttg 31252330  T
Q  205 tactgtgatgtttagtatgatttcttaatct 235  Q
    || | ||||| |  |||||||||||||||||    
T  31252329 taatttgatgctatgtatgatttcttaatct 31252299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 11288623 - 11288721
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||| |||||||||||||| |||||| | |||||||| |||||||||||||||||||||||||||||||||||  || |||||||||||||||||||    
T  11288623 gagaagagcttaggaactgatt-gctgtgtt-tttgtcttggcaattctaaggtaagggtgggattatctttcaatgatcttaatatataatttctgaaa 11288720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 15458560 - 15458492
Alignment:
Q  41 tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  15458560 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 15458492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 15465155 - 15465087
Alignment:
Q  41 tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  15465155 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 15465087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 10986173 - 10986235
Alignment:
Q  49 tgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||||||||||||| || |||||||||||| ||||||| |||||||||| ||||||    
T  10986173 tgcaattctaaggtaagggtgagactatctttcaataatcataatctataatttctaaaaatt 10986235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 34639971 - 34640041
Alignment:
Q  41 tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    |||||||| |||||||||||||||||||| || ||||| |||||| || |||| |||||||||||||||||    
T  34639971 tttgtcttcgcaattctaaggtaagggtgagactatctctcaataatcttaatctataatttctgaaaatt 34640041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 34646645 - 34646715
Alignment:
Q  41 tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    |||||||| |||||||||||||||||||| || ||||| |||||| || |||| |||||||||||||||||    
T  34646645 tttgtcttcgcaattctaaggtaagggtgagactatctctcaataatcttaatctataatttctgaaaatt 34646715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 28288472 - 28288537
Alignment:
Q  17 cttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaat 84  Q
    |||||||||||||| |||||| | ||||||||||||||||||||||||||||| || ||||| |||||    
T  28288472 cttaggaactgatt-gctgtgtt-tttgtctttgcaattctaaggtaagggtgagactatctctcaat 28288537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 29614146 - 29614201
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  29614146 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 29614201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 4477912 - 4477858
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  4477912 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 4477858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 196
Target Start/End: Complemental strand, 9187550 - 9187409
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatta-atc-aattgaattgttctt-aaggtaaaattgggaaattaagg 153  Q
    ||||||||||||| || ||||| |||||| || ||||| |||||||||||||| || ||| ||||||||||||||| ||  ||||| | || |||| |||    
T  9187550 taaggtaagggtgagactatctctcaataatcttaatacataatttctgaaaaatagatctaattgaattgttcttgaatataaaaattgggaatt-agg 9187452  T
Q  154 gttaatgatgattttgaaagaaaaggtataagaatcaggttta 196  Q
    ||| ||| |||||||||||| || | | ||||||||| |||||    
T  9187451 gttgatgctgattttgaaaggaatgatgtaagaatcatgttta 9187409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 23839253 - 23839199
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  23839253 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 23839199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 24512836 - 24512898
Alignment:
Q  49 tgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||| |||||||| |||||| || ||||| |||||| ||||| |||||||||||||||||||    
T  24512836 tgcaaatctaaggtgagggtgagactatctctcaataatcatagtatataatttctgaaaatt 24512898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 12168418 - 12168366
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||||||||| || ||||| |||||| ||||||| ||||||||||||||    
T  12168418 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaa 12168366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 19287327 - 19287275
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||||||||| || ||||| |||||| ||||||| ||||||||||||||    
T  19287327 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaa 19287275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 19785869 - 19785921
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||||||||| || ||||| |||||| ||||||| ||||||||||||||    
T  19785869 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaa 19785921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 19878511 - 19878459
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||||||||| || ||||| |||||| ||||||| ||||||||||||||    
T  19878511 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaa 19878459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 930095 - 930150
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    |||||||||||||| || ||||| |||||| ||||||| |||| ||||||||||||    
T  930095 ctaaggtaagggtgagactatctctcaataatcataatctatagtttctgaaaatt 930150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 18800493 - 18800438
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    |||| ||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  18800493 ctaatgtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 18800438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 24563508 - 24563475
Alignment:
Q  41 tttgtctttgcaattctaaggtaagggtgggatt 74  Q
    ||||||||||||||||||||||||||||| ||||    
T  24563508 tttgtctttgcaattctaaggtaagggtgagatt 24563475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 19884287 - 19884235
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||| |||||| || ||||| |||||| ||||||| ||||||||||||||    
T  19884287 ctaaggttagggtgagactatctctcaataatcataatctataatttctgaaa 19884235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 135540 - 135304
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  135540 gagaagagcttaggaactgatttgctgtgctatttgtctttgcaattctaaggtaagcgtgagattatctttcaatagtcataatatataatttctgaaa 135441  T
Q  109 attaatcaattgaattgttctt-aaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttac 207  Q
    |||||||||||||| ||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||| ||     
T  135440 attaatcaattgaactgttcttaaaggtaaaattgag-aattaagggttaatgatgattttgaaagaaaaggtgtaagaatcaggtttattgtgttgtaa 135342  T
Q  208 tgtgatgtttagtatgatttcttaatctaggttattgat 246  Q
    | ||||| ||||||||||||||||||||| ||| |||||    
T  135341 tttgatg-ttagtatgatttcttaatctatgttgttgat 135304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 16146791 - 16147008
Alignment:
Q  18 ttaggaactgattt-gctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatca 116  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16146791 ttaggaactgattttgctgtgctatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatca 16146890  T
Q  117 attgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtt 216  Q
    ||| || |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |   ||| |    
T  16146891 attaaactgttcttaaggtaaaatttggaaaataagggttaatgatgattttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgat 16146990  T
Q  217 tagtatgatttcttaatc 234  Q
    ||||||||||||||||||    
T  16146991 tagtatgatttcttaatc 16147008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 49 - 236
Target Start/End: Complemental strand, 27906328 - 27906140
Alignment:
Q  49 tgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaat-caattgaattgttctt-aaggtaaaattgggaa 146  Q
    |||||||||||| |||||||||||||||||||||||  ||||||| ||||||||||||||||||||  ||| |||| |||||| ||| |||||||| | |    
T  27906328 tgcaattctaagataagggtgggattatctttcaatgatcataatgtataatttctgaaaattaatataatagaatagttcttgaagataaaattgag-a 27906230  T
Q  147 attaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtttagtatgatttcttaatcta 236  Q
    |||| ||  | ||| ||||||||||||||||||| ||||||||| |||||   |||| || | |||||||  ||||||||||||||||||    
T  27906229 attagggtgtgatgttgattttgaaagaaaaggtgtaagaatcatgtttaatgtgttgtaatttgatgttccgtatgatttcttaatcta 27906140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 59 - 170
Target Start/End: Complemental strand, 14486713 - 14486601
Alignment:
Q  59 aggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt-aaggtaaaattgggaaattaagggtt 156  Q
    ||||||||||| || |||| ||||||  ||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||| |||  ||||||    
T  14486713 aggtaagggtgagactatccttcaatgatcataatatataatttctgaaaattaatcgaattgaattgttcttgaagataaaattggg-aatatagggtt 14486615  T
Q  157 aatgatgattttga 170  Q
     |||||||||||||    
T  14486614 gatgatgattttga 14486601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 236
Target Start/End: Complemental strand, 15408196 - 15408013
Alignment:
Q  55 tctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaat--taatcaattgaattgttctt-aaggtaaaattgggaaattaa 151  Q
    ||||||||||||||| || ||||| |||||| ||||| ||||||||||||||||||  |  | |  |||||||||||| ||   |||||||||||||| |    
T  15408196 tctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgttttaacatgaattgttcttgaaatgaaaattgggaaatt-a 15408098  T
Q  152 gggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtttagtatgatttcttaatcta 236  Q
    ||||| ||| |||||||| ||| || ||| |||| |||| |||||   |||| || | ||||||| || ||||||||||||||||    
T  15408097 gggttgatgctgattttggaaggaatggtttaaggatcatgtttaatgtgttgtaatttgatgttcagaatgatttcttaatcta 15408013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 53483775 - 53483708
Alignment:
Q  41 tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||| |||||||||||||||||||| || ||||| |||||| ||||||| ||||||| ||||||    
T  53483775 tttgtcttcgcaattctaaggtaagggtgagactatctctcaataatcataatctataattcctgaaa 53483708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 11848169 - 11848114
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    |||||||||||||| || ||||| |||||| ||||||| ||||||| |||||||||    
T  11848169 ctaaggtaagggtgagactatctctcaataatcataatctataattcctgaaaatt 11848114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 8045832 - 8045884
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||||||||| || ||||| || ||| ||||||| ||||||||||||||    
T  8045832 ctaaggtaagggtgagactatctctcgataatcataatctataatttctgaaa 8045884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 49922 - 50149
Alignment:
Q  9 gagaagaacttaggaactgattt-gctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaa 107  Q
    ||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  49922 gagaagaacttaggaactgattttgttgtgctatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctaaa 50021  T
Q  108 aattaatcaattgaattgttcttaaggt-aaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgtttta 206  Q
    |||||||||||| || |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  50022 aattaatcaattaaactgttcttaaggtaaaaattgggaaaataagggttaatgatgattttgaaagaaaaggtgtaagaatcaggtttataatgttata 50121  T
Q  207 ctgtgatgtttagtatgatttcttaatc 234  Q
     |   | | |||||||||||||||||||    
T  50122 tttgaaagattagtatgatttcttaatc 50149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 1865 - 2053
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1865 gagaagaacttaggaacggatttgctgtgctttttgtctttgcaattgtaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 1964  T
Q  109 attaatcaattgaattgttctt-aaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttat 197  Q
    |||||||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  1965 attaatcaattgaactgttcttgaaagtaaaattggg-aattaagggttaatgatgattttgaaagaaaaggtgtaagaattaggtttat 2053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 9434 - 9201
Alignment:
Q  13 agaacttaggaa-ctgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    |||||||||||| |||| |||||||| | | ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9434 agaacttaggaaactgaattgctgtg-tctctgtctctacaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 9336  T
Q  112 aatcaattgaattgttctt-aaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgt 210  Q
    ||||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||  |||| || | |    
T  9335 aatcaattgaactgttcttaaaagtaaaattggg-aattaagggttaatgatgattttgaaagaaaaggtgtaagaattaggtttattgtgttgtaattt 9237  T
Q  211 gatgtttagtatgatttcttaatctaggttattgat 246  Q
    ||||||||||||||||||| |||||| ||| |||||    
T  9236 gatgtttagtatgatttctcaatctatgttgttgat 9201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 1098 - 910
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||| |||||| |||||||||||| | ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||| ||||||||||    
T  1098 gagaagaacctaggaattgatttgctgtgct-tttgtctttgcaattctaaggtaagggtgggatcatctctcaatagtgataatatatgatttctgaaa 1000  T
Q  109 attaatcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataa 199  Q
    ||||| ||||| || |||||||| ||||||||||||||| | ||||||||||  ||||||| ||||||| || ||||| | ||||||||||    
T  999 attaagcaatttaactgttcttatggtaaaattgggaaaattagggttaatggcgattttg-aagaaaatgtgtaagatttaggtttataa 910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1469 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold1469
Description:

Target: scaffold1469; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 41 - 235
Target Start/End: Complemental strand, 1425 - 1233
Alignment:
Q  41 tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaattgttcttaaggtaaaat 140  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||  ||||||||  |||||||||||||| ||||| || |||||||||||||||||    
T  1425 tttgtctttgcaattctaaggtaagggtgggatttcctttcaatagtgttaatatatgctttctgaaaattaaacaatttaactgttcttaaggtaaaat 1326  T
Q  141 tgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtttagtatgatttcttaatct 235  Q
    ||||||| | |||  |||||||||||||| ||||||| |  ||||| ||||||||| |||||| || | ||||| ||||||||||||| ||||||    
T  1325 tgggaaaattaggtctaatgatgattttg-aagaaaatgcgtaagattcaggtttacaatgttataat-tgatgattagtatgatttcctaatct 1233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 10341 - 10116
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||| ||||||||||| | ||||||| | ||||||||||||||||||| ||||||||| ||||| ||||||||| ||||||||||||    
T  10341 gagaagaacttaggaacggatttgctgtgctttttgtctctacaattctaaggtaagggtgagattatcttccaataatcataatatgtaatttctgaaa 10242  T
Q  109 attaatcaattgaattgttcttaag-gtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgt-ttta 206  Q
    |||||||||||||||||||| | ||  ||||||||||||  | |||||| ||| | ||||||||||  | ||| ||||||||| |||  |||||| ||||    
T  10241 attaatcaattgaattgttcatgagaataaaattgggaa--ttagggttgatgctaattttgaaagggatggtgtaagaatcatgtt--taatgtgttta 10146  T
Q  207 ctgtgatgtttagtatgatttcttaatcta 236  Q
     | |  ||||||| ||||||||||||||||    
T  10145 gtttagtgtttagaatgatttcttaatcta 10116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 16023 - 16242
Alignment:
Q  15 aacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctg-aaaattaa 113  Q
    ||||||||| ||||||||||||| || || |   | ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||    
T  16023 aacttaggagctgatttgctgtgttaattcttcctacaattctaaggtaagggtgggattatctttcaatagttataatatatgatttctgaaaaattaa 16122  T
Q  114 tcaattgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgat 213  Q
    |||||| || |||| ||||| ||||| | || |||| ||||||||||||||||||| ||||||| ||  |||||||||||| || ||||| || | ||||    
T  16123 tcaatttaactgtttttaagataaaaattgg-aatttagggttaatgatgattttg-aagaaaatgtgcaagaatcaggttcatgatgttgta-tttgat 16219  T
Q  214 gtttagtatgatttcttaatcta 236  Q
    | ||||||||||||  |||||||    
T  16220 gattagtatgattttctaatcta 16242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 492981 - 493162
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||| ||||||||||| | ||||||| ||||||||||||||||||||| ||||||||||||||| || |||| ||||||||||||||    
T  492981 gagaagaacttaggaacggatttgctgtgctttttgtctctgcaattctaaggtaagggtgagattatctttcaataatc-taatgtataatttctgaaa 493079  T
Q  109 attaatc-aattgaattgttctt-aaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatca 190  Q
    ||||||| ||| |||| ||||||  || |||||| | | ||||| ||  ||||| ||||||||||||||||||| |||||||||    
T  493080 attaatctaatggaatagttcttggagataaaatagag-aattagggtataatgctgattttgaaagaaaaggtgtaagaatca 493162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 41 - 235
Target Start/End: Original strand, 5842 - 6036
Alignment:
Q  41 tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt-aaggtaaa 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||| |||||||| |||||| ||| ||||    
T  5842 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaattaatctaattgaatagttcttgaagataaa 5941  T
Q  139 attgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtttagtatgatttcttaatct 235  Q
    |||| | ||||| ||  | | | |||||||||||| |||||| ||||||| | |||||  ||||| || | |||||||  |||||||||||||||||    
T  5942 attgag-aattagggtatgaggctgattttgaaag-aaaggtgtaagaattatgtttaacatgttgtaatttgatgttatgtatgatttcttaatct 6036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 45 - 228
Target Start/End: Original strand, 91191 - 91374
Alignment:
Q  45 tctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaattgttcttaaggt---aaaatt 141  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||||||||||| ||||| || |||| ||| |||   ||||||    
T  91191 tctttgcaattctaaggtaagggtgggatcatctttcaataatgataatatatgatttctgaaaattaagcaatttaactgtttttatggtaaaaaaatt 91290  T
Q  142 gggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtttagtatgatttc 228  Q
    |||||||| ||||||||||   |||||| ||||||| || ||||| | |||||||||||||| || | ||||| ||| |||||||||    
T  91291 gggaaatt-agggttaatggcaattttg-aagaaaatgtgtaagatttaggtttataatgttgta-tttgatgattaatatgatttc 91374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 45 - 228
Target Start/End: Original strand, 96917 - 97100
Alignment:
Q  45 tctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaattgttcttaaggt---aaaatt 141  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||||||||||| ||||| || |||| ||| |||   ||||||    
T  96917 tctttgcaattctaaggtaagggtgggatcatctttcaataatgataatatatgatttctgaaaattaagcaatttaactgtttttatggtaaaaaaatt 97016  T
Q  142 gggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtttagtatgatttc 228  Q
    |||||||| ||||||||||   |||||| ||||||| || ||||| | |||||||||||||| || | ||||| ||| |||||||||    
T  97017 gggaaatt-agggttaatggcaattttg-aagaaaatgtgtaagatttaggtttataatgttgta-tttgatgattaatatgatttc 97100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 111938 - 111885
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaa 109  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||    
T  111938 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 111885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 10148 - 10250
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||| ||||||||||| | ||||||| | |||||||||||||||||||||| ||||| |||||| ||||||| ||||||||||||||    
T  10148 gagaagaacttaggaacggatttgctgtgctttttgtctatacaattctaaggtaagggtgggactatctctcaataatcataatctataatttctgaaa 10247  T
Q  109 att 111  Q
    |||    
T  10248 att 10250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 11042 - 11111
Alignment:
Q  15 aacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaat 84  Q
    ||||||||| ||||||||||||| || || |   |  |||||||||||||||||||||||||| ||||||    
T  11042 aacttaggagctgatttgctgtgttaattcttcctaaaattctaaggtaagggtgggattatccttcaat 11111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 1478 - 1580
Alignment:
Q  9 gagaagaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||||||||||| ||||||||||| | ||||||| | |||||||||||||||||||||| ||||| |||||| ||||||| ||||||||||||||    
T  1478 gagaagaacttaggaacggatttgctgtgctttttgtctatacaattctaaggtaagggtgggactatctctcaataatcataatctataatttctgaaa 1577  T
Q  109 att 111  Q
    |||    
T  1578 att 1580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 236
Target Start/End: Original strand, 23562 - 23750
Alignment:
Q  49 tgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt-aaggtaaaattgggaa 146  Q
    |||||||||||||||||||||||||||||||| |||  ||||||| ||||||||||||||||||||| ||  |||| |||||| |||  ||||||| | |    
T  23562 tgcaattctaaggtaagggtgggattatctttgaatgatcataatgtataatttctgaaaattaatctaaaagaatagttcttgaagacaaaattgag-a 23660  T
Q  147 attaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtttagtatgatttcttaatcta 236  Q
    |||| ||  | ||| ||||||||||||||||| | ||||||||| |||||   |||| || | ||||||| |||||||||||||||||||    
T  23661 attagggtgtgatgctgattttgaaagaaaagatgtaagaatcatgtttaatgtgttgtaatttgatgttcagtatgatttcttaatcta 23750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 3359 - 3582
Alignment:
Q  13 agaacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatta 112  Q
    ||||||||||||| ||||||| ||| | |||||||||||||||||||||||||||||  |||||||||||||     |||||||||||||||||||||||    
T  3359 agaacttaggaacggatttgccgtgctttttgtctttgcaattctaaggtaagggtgatattatctttcaatgaatttaatatataatttctgaaaatta 3458  T
Q  113 atc-aattgaattgttctt-aaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgt 210  Q
    ||| ||  |||| |||||| ||| |||||||| | ||||| ||  | |   |||||||||||| |||||| ||||||||| |||||  ||||| || | |    
T  3459 atctaaaagaatagttcttgaagataaaattgag-aattagggtatgagactgattttgaaag-aaaggtgtaagaatcatgtttaatatgttgtaattt 3556  T
Q  211 gatgtttagtatgatttcttaatcta 236  Q
    ||| ||  ||||||||||||||||||    
T  3557 gatattctgtatgatttcttaatcta 3582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 13879 - 13973
Alignment:
Q  41 tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctg-aaaattaatc-aattgaattgttcttaag 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||| |||||||||| |||||||| ||| |||||    
T  13879 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaaattaatctaattgaatagtttttaag 13973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 236
Target Start/End: Complemental strand, 73347 - 73159
Alignment:
Q  49 tgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt-aaggtaaaattgggaa 146  Q
    ||||||| | ||||||||||||||||||||||||||  ||||||| |||||||| |||||||||||| ||| | || | |||| ||| |||||||| | |    
T  73347 tgcaattatgaggtaagggtgggattatctttcaatgatcataatgtataatttatgaaaattaatctaataggatagctcttgaagataaaattgag-a 73249  T
Q  147 attaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtttagtatgatttcttaatcta 236  Q
    |||| ||  | ||| ||||||||||||||| ||| ||||||||| |||||   |||| || | |||||||  ||||||||||||||||||    
T  73248 attagggtgtgatgttgattttgaaagaaacggtgtaagaatcatgtttaatgtgttgtaatttgatgttccgtatgatttcttaatcta 73159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 70 - 6
Alignment:
Q  45 tctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||    
T  70 tctttgcaattctaaggtaagggtgggattatctttcaatagttctaatatatgatttctgaaaa 6  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 236
Target Start/End: Original strand, 40524 - 40713
Alignment:
Q  49 tgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaat--taatcaattgaattgttcttaaggt-aaaattggga 145  Q
    ||||| ||||||||||||||| || ||||| |||||| ||||| ||||||||||||||||||  |  | |  |||||||||||| || | ||||||||||    
T  40524 tgcaaatctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgttttaacatgaattgttcttgagataaaaattggga 40623  T
Q  146 aattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtttagtatgatttcttaatcta 236  Q
    |||| |||||| ||| |||||||||||| || ||| |||| |||| |||||   |||| || | ||||||| || ||||||||||||||||    
T  40624 aatt-agggttgatgctgattttgaaaggaatggtgtaaggatcatgtttaacgtgttgtaatttgatgttcagaatgatttcttaatcta 40713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 236
Target Start/End: Original strand, 10546 - 10730
Alignment:
Q  52 aattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt-aaggtaaaattgggaaatt 149  Q
    |||||||||||||| ||||||||||||||||||  || |||| ||||||||||||||||||||| ||| |||| |||||| ||| |||||||| | ||||    
T  10546 aattctaaggtaagtgtgggattatctttcaatgatcttaatgtataatttctgaaaattaatctaatagaatagttcttgaagataaaattgag-aatt 10644  T
Q  150 aagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtttagtatgatttcttaatcta 236  Q
    | ||  | | | |||||||||||| |||||| ||||||||| |||||    ||| || | |||||||  ||||||||||||||||||    
T  10645 agggtatgaggctgattttgaaag-aaaggtgtaagaatcatgtttaatgagttgtaatttgatgttctgtatgatttcttaatcta 10730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 196
Target Start/End: Complemental strand, 16875 - 16735
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt-aaggtaaaattgggaaattaaggg 154  Q
    ||||||||||||| || ||||| |||||| ||||| ||||||||||||||||||| ||| ||||||||||||||| ||  ||||| | || |||| ||||    
T  16875 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattgaattgttcttgaaaataaaaattgggaatt-aggg 16777  T
Q  155 ttaatgatgattttgaaagaaaaggtataagaatcaggttta 196  Q
    || ||| |||||||||||| || ||| ||||||||| |||||    
T  16776 ttgatgctgattttgaaaggaatggtttaagaatcatgttta 16735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 236
Target Start/End: Complemental strand, 135530 - 135347
Alignment:
Q  55 tctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaat--taatcaattgaattgttcttaaggt-aaaattgggaaattaa 151  Q
    ||||||||||||||| || ||||| |||||| ||||| ||||||||||||||||||  |  | |  |||||||||||| || | |||||||||||||| |    
T  135530 tctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgttttaacatgaattgttcttgagataaaaattgggaaatt-a 135432  T
Q  152 gggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtttagtatgatttcttaatcta 236  Q
    ||||| ||| |||||||||||| || ||| |||| |||| |||||   |||| || | ||||||| || ||||||||||||||||    
T  135431 gggttgatgctgattttgaaaggaatggtgtaaggatcatgtttaatgtgttgtaatttgatgttcagaatgatttcttaatcta 135347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 111756 - 111686
Alignment:
Q  41 tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    |||||||| |||||||||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  111756 tttgtcttcgcaattctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 111686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 11850 - 11905
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  11850 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 11905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 196
Target Start/End: Complemental strand, 13687 - 13547
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt-aaggtaaaattgggaaattaaggg 154  Q
    ||||||||||||| || ||||| |||||| || ||||| |||||||||||||||| ||| ||||||||||||||| ||  ||||| | || |||| ||||    
T  13687 taaggtaagggtgagactatctctcaataatcttaatacataatttctgaaaattgatctaattgaattgttcttgaaaataaaaattgggaatt-aggg 13589  T
Q  155 ttaatgatgattttgaaagaaaaggtataagaatcaggttta 196  Q
    || ||| |||||||||||| || ||| ||||||||| |||||    
T  13588 ttgatgctgattttgaaaggaatggtgtaagaatcatgttta 13547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 116951 - 116877
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt 130  Q
    ||||||||||||| || ||||| |||||| ||||| ||||||||||||||||||| ||| |||||||||||||||    
T  116951 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattgaattgttctt 116877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 770 - 717
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaa 109  Q
    |||||||||||||||||||||||||||||  || ||||||||||||||||||||    
T  770 ctaaggtaagggtgggattatctttcaatgatcttaatatataatttctgaaaa 717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 8 - 148
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt-aaggtaaaattgggaaattaaggg 154  Q
    ||||||||||||| || ||||| |||||| || ||||| |||||||||||||||| ||| ||||||||||||||| ||  ||||| | || |||| ||||    
T  8 taaggtaagggtgagactatctctcaataatcttaatacataatttctgaaaattgatctaattgaattgttcttgaaaataaaaattgggaatt-aggg 106  T
Q  155 ttaatgatgattttgaaagaaaaggtataagaatcaggttta 196  Q
    ||  || |||||||||||| || ||| ||||||||| |||||    
T  107 ttgttgctgattttgaaaggaatggtgtaagaatcatgttta 148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 101928 - 102002
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt 130  Q
    ||||||||||||| || ||||| |||||| ||||| ||||||||| ||||||||| ||| |||||||||||||||    
T  101928 taaggtaagggtgagactatctctcaataatcatagtatataattcctgaaaattgatctaattgaattgttctt 102002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1461 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1461
Description:

Target: scaffold1461; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 1485 - 1592
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttc-ttaaggtaaaattgggaaattaaggg 154  Q
    ||||||||||||| ||||||||| ||||  || ||||||  |||||||||||||||||| |||||  |||||| | ||| |||||||||| |||||||||    
T  1485 taaggtaagggtgagattatcttgcaatgatcttaatatgcaatttctgaaaattaatctaattg-gttgttcataaagataaaattggg-aattaaggg 1582  T
Q  155 ttaatgatga 164  Q
    ||||||||||    
T  1583 ttaatgatga 1592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 750 - 805
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  750 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 11397 - 11342
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  11397 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 11342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 30913 - 30858
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  30913 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 30858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 45259 - 45326
Alignment:
Q  41 tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||| |||| ||||||||||||||| || ||||| |||||| ||||||| ||||||| ||||||    
T  45259 tttgtcttcgcaaatctaaggtaagggtgagactatctctcaataatcataatctataattcctgaaa 45326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 236
Target Start/End: Complemental strand, 13019 - 12831
Alignment:
Q  58 aaggtaagggtgggattatcttt-caatagtcataatatataatttct-gaaaattaatc---aattgaattgttctt-aaggtaaaa--ttgggaaatt 149  Q
    ||||||||||||||||||||||| |||||||  |||||||| ||||||  ||||||||||   | || || ||||||| |||||||||  | ||||||||    
T  13019 aaggtaagggtgggattatctttacaatagttctaatatatgatttctaaaaaattaatctaaattttaactgttcttaaaggtaaaaattggggaaatt 12920  T
Q  150 aagggttaatg-atgattttgaaagaaaaggtataagaatc-aggtttataatgttttactgtgatgtttagtatgatttcttaatcta 236  Q
     |||||||||| |||||| |||| |||| |   |||||||| |||||||||||||| || |   ||| ||||||||||||| |||||||    
T  12919 tagggttaatgtatgattctgaaggaaatgtgttaagaatctaggtttataatgttgtatttgtatgattagtatgatttcctaatcta 12831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 1441 - 1367
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatc-aattgaattgttctt 130  Q
    ||||||||||||| || |||||||||||  |||| ||||||||||| |||||||| ||| |||| ||||||||||    
T  1441 taaggtaagggtgagactatctttcaatgatcatgatatataatttttgaaaattgatctaattaaattgttctt 1367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 22585 - 22733
Alignment:
Q  49 tgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaat--taatcaattgaattgttcttaaggtaaaattgggaa 146  Q
    ||||| || |||||||||||| || ||||| |||||| ||||| ||||||||||||||||||  |  | |  |||||||||||| || ||||| | || |    
T  22585 tgcaaatccaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaatcgttttaacatgaattgttcttgagataaaaattggga 22684  T
Q  147 attaagggttaatgatgattttgaaagaaaaggtataagaatcaggttta 196  Q
    ||| |||||| ||| ||||| |||||| || ||| ||||||||| |||||    
T  22685 att-agggttgatgctgattctgaaaggaatggtgtaagaatcatgttta 22733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 17700 - 17644
Alignment:
Q  55 tctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||||||| || ||||| ||||||  |||||| |||||||||||||||||    
T  17700 tctaaggtaagggtgagactatctctcaataaccataatgtataatttctgaaaatt 17644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 14398 - 14450
Alignment:
Q  59 aggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    ||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  14398 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 14450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 987 - 932
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    |||||||||||||| || ||||| |||||| ||||||| |||| ||||||||||||    
T  987 ctaaggtaagggtgagactatctctcaataatcataatctatagtttctgaaaatt 932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 8132 - 8077
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    |||||||||||||| || ||||| |||||| ||||||| |||| ||||||||||||    
T  8132 ctaaggtaagggtgagactatctctcaataatcataatctatagtttctgaaaatt 8077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 236
Target Start/End: Original strand, 34276 - 34457
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaat--taatcaattgaattgttcttaag-gtaaaattgggaaattaagg 153  Q
    ||||||||||||| || ||||| || ||| ||||| ||||||||||||||||||  |  | |  |||||||||||| ||  ||||| | || |||| |||    
T  34276 taaggtaagggtgagactatctctcgataatcatagtatataatttctgaaaattgttttaacatgaattgttcttgagaataaaaattgggaatt-agg 34374  T
Q  154 gttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttttactgtgatgtttagtatgatttcttaatcta 236  Q
    ||| ||| |||||||||||| || ||| ||||||| | |||||   |||| || | ||||||| || ||||||||||||||||    
T  34375 gttgatgctgattttgaaaggaatggtgtaagaattatgtttaatgtgttgtaatttgatgttcagaatgatttcttaatcta 34457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 18225 - 18170
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 111  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||| ||||||||    
T  18225 ctaaggtaagggtgagactatctctcaataatcataatctataatttttgaaaatt 18170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 172
Target Start/End: Original strand, 11021 - 11137
Alignment:
Q  57 taaggtaagggtgggattatctttcaatagtcataatatataa-tttctgaaaattaatc-aattgaattgttcttaagg-taaaattgggaaattaagg 153  Q
    ||||||||||||| ||||||||| ||||  || ||||||  || |||||||||||||||| |||||  |||||| ||||| ||||||||||  |||||||    
T  11021 taaggtaagggtgagattatcttgcaatgatcttaatatgcaattttctgaaaattaatctaattg-tttgttcataaggataaaattggg-gattaagg 11118  T
Q  154 gttaatgatgattttgaaa 172  Q
    ||| ||||||| |||||||    
T  11119 gttgatgatgactttgaaa 11137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 1242 - 1181
Alignment:
Q  47 tttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||  |||||||||||||| || ||||| |||||| ||||||| ||||||| ||||||    
T  1242 tttgcaaaactaaggtaagggtgagactatctctcaataatcataatctataattcctgaaa 1181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 1691 - 1784
Alignment:
Q  15 aacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||| ||||||||||||| || || |   | |||  |||||||||||||| || ||||| |||||| ||||||| ||||||| ||||||    
T  1691 aacttaggagctgatttgctgtgttaattcttcctacaaaactaaggtaagggtgagactatctctcaataatcataatctataattcctgaaa 1784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 5714 - 5807
Alignment:
Q  15 aacttaggaactgatttgctgtggtatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    ||||||||| ||||||||||||| || || |   | |||  |||||||||||||| || ||||| |||||| ||||||| ||||||| ||||||    
T  5714 aacttaggagctgatttgctgtgttaattcttcctacaaaactaaggtaagggtgagactatctctcaataatcataatctataattcctgaaa 5807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 1897 - 1950
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaa 109  Q
    |||||||||||||| || ||| | |||||| ||||||| |||||||||||||||    
T  1897 ctaaggtaagggtgagactatatctcaataatcataatctataatttctgaaaa 1950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 8574 - 8627
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaa 109  Q
    |||||||||||||| || ||| | |||||| ||||||| |||||||||||||||    
T  8574 ctaaggtaagggtgagactatatctcaataatcataatctataatttctgaaaa 8627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 1441 - 1389
Alignment:
Q  119 tgaattgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaa 171  Q
    |||||||||||| || ||||||||| ||| | |||||||||| ||||||||||    
T  1441 tgaattgttcttgagataaaattggaaaaattagggttaatgctgattttgaa 1389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 346 - 294
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||||||||| || ||||| ||||||  |||||| ||||||||||||||    
T  346 ctaaggtaagggtgagactatctctcaataaccataatctataatttctgaaa 294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 50234 - 50182
Alignment:
Q  56 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 108  Q
    |||||||||||||| || ||||| |||||| ||||||| ||||||| ||||||    
T  50234 ctaaggtaagggtgagactatctctcaataatcataatctataattcctgaaa 50182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University