View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2828_low_1 (Length: 564)
Name: NF2828_low_1
Description: NF2828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2828_low_1 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 40382816 - 40383213
Alignment:
| Q |
1 |
tcacattctccacgtgagttctttactcagatttccctgaaacatgatagcagtttgtttagaatttagatcctctaaaggaagtaaagttgataatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40382816 |
tcacattctccacgtgagttcttttctcagatttccctgaaacatgatagcagtttgtttagaatttagatcttctaaaggaagtaaagttgataatttg |
40382915 |
T |
|
| Q |
101 |
aaagttaataatttccattgaagtaaagattaagaataattggcgaataagctgtaaaaatcacaagtcattactcatgtgtatagatgttctcacaaat |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40382916 |
aaagttaataatttccgttgaagtaaagattaagaataattggtgaataagctgtaaaaatcacaagtcattactcatgtgtgaagatgttctcacaaat |
40383015 |
T |
|
| Q |
201 |
gtctatcccattggcagcatgtatgttatgtagcatagggagtatcgtctgtttatggtttaataattcaagttatcactaatataggaagcatctttgt |
300 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
40383016 |
gtctatcgcatcggcagcatgtatgttatgtagcatagggagtatcatctgtttatagtttaataattcaagttatcactaacataggaagcatcttt-t |
40383114 |
T |
|
| Q |
301 |
tatttagcataagaagtatcgttttatgtaccttttgtgtataactattattaatttannnnnnngaatatataaatgtatcaaatactctctccgtct |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40383115 |
tatttagcataagaagtatcgttttatgtaccttttgtgtataactattattaatttatttttttgaatatataaatgtatcaaatactctctccgtct |
40383213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 400 - 564
Target Start/End: Original strand, 28110915 - 28111079
Alignment:
| Q |
400 |
ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccatctaaaaggccca |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28110915 |
ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccacctaaaaggccca |
28111014 |
T |
|
| Q |
500 |
aaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaac |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28111015 |
aaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaac |
28111079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 400 - 564
Target Start/End: Complemental strand, 24837334 - 24837170
Alignment:
| Q |
400 |
ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccatctaaaaggccca |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24837334 |
ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccacctaaaaggccca |
24837235 |
T |
|
| Q |
500 |
aaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaac |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24837234 |
aaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaac |
24837170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 486
Target Start/End: Complemental strand, 30871518 - 30871450
Alignment:
| Q |
418 |
agcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgccca |
486 |
Q |
| |
|
||||| |||||||||||||| ||| | |||||||||| | ||||||||||| | ||||||| |||||| |
|
|
| T |
30871518 |
agcaacgaggctgtcatatattccctgtcaaaacagcaaaacagcagcatacaacagcctcaccgccca |
30871450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 2 - 274
Target Start/End: Original strand, 22792720 - 22792978
Alignment:
| Q |
2 |
cacattctccacgtgagttctttactcagatttccctgaaacatgatagcagtttgtttagaatttagatcctctaaaggaagtaaagttgataatttga |
101 |
Q |
| |
|
||||||||| || ||||| |||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22792720 |
cacattctctacatgagtccttttctcagattaccctgaaacatgatagcattttgtttagaatttagatcctctaaaggaagtaaagttgataatttca |
22792819 |
T |
|
| Q |
102 |
aagttaataatttccattgaagtaaagattaagaataattggcgaataagctgtaaaaatcacaagtcattactcatgtgtatagatgttctcacaaatg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
22792820 |
aagttaataatttccattgaagtaaagattaagaataattggtgaataagctg--agaatcacaagtaattactcatgtctaaagatgttctcacaaatg |
22792917 |
T |
|
| Q |
202 |
tctatcccattggcagcatgtatgttatgtagcatagggagtatcgtctgtttatggtttaataattcaagtt |
274 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
22792918 |
tctatc------gcagcatg-----tatgtagcatagggagtatcatctgtttataattt-ataattcaagtt |
22792978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 22810174 - 22810275
Alignment:
| Q |
18 |
gttctttactcagatttccctgaaacatgatagcagtttgtttagaatttagatcctctaaaggaagtaaagttgataatttgaaagttaataatttcca |
117 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| ||||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
22810174 |
gttcttttctcagattcccctgaaacatgataacagtttgtt-agactttagatccactaaaggaagtaaagttgataatgtgaaagttcataatttcca |
22810272 |
T |
|
| Q |
118 |
ttg |
120 |
Q |
| |
|
||| |
|
|
| T |
22810273 |
ttg |
22810275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 22813301 - 22813366
Alignment:
| Q |
1 |
tcacattctccacgtgagttctttactcagatttccctgaaacatgatagcagtttgtttagaatt |
66 |
Q |
| |
|
|||||||||| || |||||||||| ||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22813301 |
tcacattctctacatgagttcttttctcggattttcctgaaacatgatagcagtttgtttagaatt |
22813366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 22793016 - 22793064
Alignment:
| Q |
259 |
tttaataattcaagttatcactaatataggaagcatctttgttatttagca |
309 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||||||||||||||||||| |
|
|
| T |
22793016 |
tttaataattcaagttttca--aacataggaagcatctttgttatttagca |
22793064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 400 - 564
Target Start/End: Complemental strand, 4028634 - 4028470
Alignment:
| Q |
400 |
ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccatctaaaaggccca |
499 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||||||||| || | ||| ||| || ||| |
|
|
| T |
4028634 |
ggtgcaaagaagcaggacagcagtgaggccgtcatatactcctagccaaaaaagcagaacagcagcataccaaagccgcagcacccgcataacagacccc |
4028535 |
T |
|
| Q |
500 |
aaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaac |
564 |
Q |
| |
|
|||| ||||||||||||||||| |||| |||| |||||||| |||||||| || ||||||||||| |
|
|
| T |
4028534 |
aaaaaccaccattaccgcaccagacactcttgcggattccaagtccattcgtagtacaaacaaac |
4028470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 400 - 564
Target Start/End: Complemental strand, 34326558 - 34326394
Alignment:
| Q |
400 |
ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccatctaaaaggccca |
499 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||| | |||| |||||||||||||||||| || | |||| ||| || ||| |
|
|
| T |
34326558 |
ggtgcaaagaagcaggacagcagcgaggctgtcatatactcctagccgaaaaatcagaacagcagcataccaaagccgcagcacccacgtaacagacccc |
34326459 |
T |
|
| Q |
500 |
aaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaac |
564 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||||||||||||| ||||||| || ||||||||||| |
|
|
| T |
34326458 |
aaaaaccaccattaccgcaccagacactcttgtggattccaagtccatttgtagtacaaacaaac |
34326394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 455
Target Start/End: Original strand, 35052330 - 35052375
Alignment:
| Q |
410 |
agcaggacagcaatgaggctgtcatatactcctagccaaaacagca |
455 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35052330 |
agcaggacaacaatgaggctgtcatatactcgtagccaaaacagca |
35052375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University