View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2828_low_11 (Length: 256)
Name: NF2828_low_11
Description: NF2828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2828_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 46278988 - 46278741
Alignment:
| Q |
1 |
aatttatatatgtgtctcttgtaaggggtatttttaattgatgataaagaaaaataactgattgatttttctccctatctggtgaatatatgcagtaatt |
100 |
Q |
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| T |
46278988 |
aatttatatatgtgtctcttgtaaggggtatttttaattgatgataaagaaaaataactgattgatttttctccctatctggtgaatatatgcagtaatt |
46278889 |
T |
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| Q |
101 |
agttatatatcattacattttagttttgaaatggaattgaggtgtgttcaatttaatgctgctgctattgatgtcatatccatttacataacagtgttcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46278888 |
agttatatatcattacattttagttttgaaatggagttgaggtgtgttcaatttaatgctgctgctattgatgtcatatccatttacataacagtgttcc |
46278789 |
T |
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| Q |
201 |
tgatcctacctgacatatttccacatgctgtagttgttttttcatctc |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46278788 |
tgatcctacctgacatatttccacatgctgtagttgttttttcttctc |
46278741 |
T |
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