View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2828_low_3 (Length: 418)
Name: NF2828_low_3
Description: NF2828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2828_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 23 - 405
Target Start/End: Original strand, 39903977 - 39904367
Alignment:
| Q |
23 |
aagttagggtttgaacctcgattctccacttatcgccgttagtaagttagcttgacaaaaaagacatgcgtcttaaaatgttcaagagttgcagccttgt |
122 |
Q |
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| T |
39903977 |
aagttagggtttgaacctcggttctccacttatcgccgttagtaagttagcttgacaaaaaagacatgcgtcttaaaatgttcaagagttgcagccttgt |
39904076 |
T |
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| Q |
123 |
ggtcaactttagttttgagagacttatgtgtagtgagcttacc------ggggactcttttaacattgataactcttttacaccaattatgtgtgctcgc |
216 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39904077 |
ggtcaactttagttttgagagacttatgtgtagcgagcttacctaaatgggggactcttttaacattgagaactcttttacaccaattatgtgtgctcgc |
39904176 |
T |
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| Q |
217 |
gcgctgagactaaattttaagggatcatataaactaaaagttacattttacatataaacatagcaaactttttcttcttctagatccaaccagctctggt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39904177 |
gcgctgagactaaattttaagggatcatataaactaaaagttacattttacatataaacatagcaaactttttcttcttctagatccaaccagctctggt |
39904276 |
T |
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| Q |
317 |
tgtcctcttcaagttactcccaaagattgtagtagtatgcagc--tttcgcaaaacttactcatacacctcatcttcaatatatagtattt |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39904277 |
tgtcctcttcaagttactcccaaagattgtagtagtatgcagctttttcgcaaaacttactcatacacctcatcttcaatatatagtattt |
39904367 |
T |
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