View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2828_low_4 (Length: 398)
Name: NF2828_low_4
Description: NF2828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2828_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 37771963 - 37772139
Alignment:
| Q |
1 |
ataaactataatacataaacataatatttatatctataatcatcaagcataaagttgatcccaaatgtttgtgaccctcatttaaatgatttttaataag |
100 |
Q |
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| T |
37771963 |
ataaactataattcataaacataaaatttatatctataatcatcaagcataaagttgatcccaaatgtttgtgaccctcatttaaatggtttttaataag |
37772062 |
T |
|
| Q |
101 |
tgttagtagctagttctgttgtttggcagcttaatttctttggtttaaaagcaaagctttaactagatgtttatagt |
177 |
Q |
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| T |
37772063 |
tgttagtagctagttctgttgtttggcagcttaatttctttggtttaaaagcaaagctttaactagatgtttatagt |
37772139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 221 - 346
Target Start/End: Original strand, 37772158 - 37772283
Alignment:
| Q |
221 |
gggaaaatgtttatagttccttttctttgcttcttaggaatagtcttgacttgctttctctggtgtaacatttatctgtatagggttcgaccttctcata |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37772158 |
gggaaaatgtttatagttccttttctttgcttcttaggaatagtcttgacttgctttctctggtgtaacatttatctgtatagggttcgaccttctcata |
37772257 |
T |
|
| Q |
321 |
tctttattgttttcttttgcctttat |
346 |
Q |
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| T |
37772258 |
tctttattgttttcttttgcctttat |
37772283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 58 - 169
Target Start/End: Complemental strand, 41411536 - 41411425
Alignment:
| Q |
58 |
atcccaaatgtttgtgaccctcatttaaatgatttttaataagtgttagtagctagttctgttgtttggcagcttaatttctttggtttaaaagcaaagc |
157 |
Q |
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| T |
41411536 |
atcccaaatatttgtgactgtcatgtagatggttcttaaaaagtgctagtagctagttctgttgtttggcagcttaatttctttggtttaaaagcaaagc |
41411437 |
T |
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| Q |
158 |
tttaactagatg |
169 |
Q |
| |
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|||| ||||||| |
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| T |
41411436 |
tttagctagatg |
41411425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 343
Target Start/End: Complemental strand, 41411417 - 41411315
Alignment:
| Q |
242 |
tttctttgcttcttaggaatagtcttgacttgctttctctggtgtaacatttatctgtatagggttc-gaccttctcatatctttattgttttcttttgc |
340 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| ||| || ||||| | | |||||||||||||| | || |||| | |||||||| |||||||||| |
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| T |
41411417 |
tttctttgcttcttaggaatagacttggcttgcttcctcaggcgtaacctctttctgtatagggttcaggccctctcctgcctttattgctttcttttgc |
41411318 |
T |
|
| Q |
341 |
ctt |
343 |
Q |
| |
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||| |
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| T |
41411317 |
ctt |
41411315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 161
Target Start/End: Complemental strand, 27111360 - 27111262
Alignment:
| Q |
63 |
aaatgtttgtgaccctcatttaaatgatttttaataagtgttagtagctagttctgttgtttggcagcttaatttctttggtttaaaagcaaagcttta |
161 |
Q |
| |
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|||| |||||||| |||| || ||| || |||||||||| |||||| | ||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
27111360 |
aaatatttgtgactgtcatgtagatggttcttaataagtgctagtagtttgttctgttgtttggcagcttaatttctttcgtttaaaagcaaaacttta |
27111262 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 175
Target Start/End: Complemental strand, 8308224 - 8308107
Alignment:
| Q |
58 |
atcccaaatgtttgtgaccctcatttaaatgatttttaataagtgttagtagctagttctgttgtttggcagcttaatttctttggtttaaaagcaaagc |
157 |
Q |
| |
|
||||||||| ||||||| |||| || ||| || |||||||||| |||||||||| | ||||| |||| |||||| |||||||||||| |||||||||| |
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| T |
8308224 |
atcccaaatatttgtgattgtcatgtagatggttcttaataagtgctagtagctagatatgttgcttggtagcttagtttctttggtttcaaagcaaagc |
8308125 |
T |
|
| Q |
158 |
tttaactagatgtttata |
175 |
Q |
| |
|
|||| |||| ||||||| |
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|
| T |
8308124 |
tttagttagaggtttata |
8308107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 6596607 - 6596683
Alignment:
| Q |
93 |
ttaataagtgttagtagctagttctgttgtttggcagcttaatttctttggtttaaaagcaaagctttaactagatg |
169 |
Q |
| |
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|||||||||| | |||||||| |||||||||| || |||| |||||||||||||||||||| |||||| ||||||| |
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| T |
6596607 |
ttaataagtgctggtagctagctctgttgtttctcatcttagtttctttggtttaaaagcaatgctttagctagatg |
6596683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 346
Target Start/End: Original strand, 6596694 - 6596794
Alignment:
| Q |
245 |
ctttgcttcttaggaatagtcttgacttgctttctctggtgtaacatttatctgtatagggttc-gaccttctcatatctttattgttttcttttgcctt |
343 |
Q |
| |
|
||||| |||||| ||||||||||| |||||| |||| |||||||| ||||||||| |||||| | || |||| | |||||||| ||||||||||||| |
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| T |
6596694 |
ctttgtttcttaagaatagtcttggcttgctctctcaggtgtaac--ctatctgtatcgggttcaggccctctcctgcctttattgctttcttttgcctt |
6596791 |
T |
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| Q |
344 |
tat |
346 |
Q |
| |
|
||| |
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| T |
6596792 |
tat |
6596794 |
T |
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