View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2828_low_6 (Length: 340)

Name: NF2828_low_6
Description: NF2828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2828_low_6
NF2828_low_6
[»] chr4 (1 HSPs)
chr4 (44-250)||(2761979-2762184)
[»] chr7 (2 HSPs)
chr7 (201-324)||(48653699-48653823)
chr7 (201-271)||(48576936-48577003)
[»] chr5 (1 HSPs)
chr5 (201-324)||(42861595-42861719)
[»] chr1 (1 HSPs)
chr1 (201-324)||(18472790-18472914)
[»] chr6 (1 HSPs)
chr6 (201-324)||(13773285-13773409)
[»] chr2 (4 HSPs)
chr2 (201-324)||(28267015-28267139)
chr2 (201-324)||(35670654-35670774)
chr2 (201-324)||(12774295-12774424)
chr2 (212-271)||(41340181-41340240)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 44 - 250
Target Start/End: Complemental strand, 2762184 - 2761979
Alignment:
Q  44 ttcttggagcaaaatacttgaagttttatttcattttctttttacggttaaatagattaatgaaaaatctaatttttaagggtatgtataactaataagt 143  Q
    ||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||  ||  ||||||||||||||||||    
T  2762184 ttcttggagcaaaatgcttgaagttttatttcattttccctttacggttaaatagatgaatgaaaaatctaattttgtagtatatgtataactaataagt 2762085  T
Q  144 tcttgtagcaaacggactatagcttaatgttttctactacagttagaaagaattaagttgatgaaaataaatgtgagaatgttatggaactgaaataata 243  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||| ||  ||||||||||  ||||||    
T  2762084 tcttgtagcaaacggactatagcttaatgttttctactagagtcagaaagaattaagttgatgaacatatatgtgag-attatatggaactggtataata 2761986  T
Q  244 agaagag 250  Q
    | |||||    
T  2761985 ataagag 2761979  T

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Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 201 - 324
Target Start/End: Complemental strand, 48653823 - 48653699
Alignment:
Q  201 ttgatgaaaataaatgtgagaatgttatggaactgaaataataagaagagaaatgagcattttatgaaaga-nnnnnnngtcatgtataagatattgtgt 299  Q
    |||||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||| ||||||||||||         ||||||||||||| ||||||    
T  48653823 ttgatgaacataaatgtgagatcgttatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttatcatgtataagatgttgtgt 48653724  T
Q  300 tgttactttctgtgtggttgcctaa 324  Q
    | |||||||||||||||||||||||    
T  48653723 tattactttctgtgtggttgcctaa 48653699  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 48576936 - 48577003
Alignment:
Q  201 ttgatgaaaataaatgtgagaatgttatggaactgaaataataagaagagaaatgagcattttatgaaaga 271  Q
    |||||||| ||||||||||||  ||||| ||||| |||||||   ||||||||||||| ||||||||||||    
T  48576936 ttgatgaacataaatgtgagatcgttatcgaactaaaataat---aagagaaatgagccttttatgaaaga 48577003  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 324
Target Start/End: Original strand, 42861595 - 42861719
Alignment:
Q  201 ttgatgaaaataaatgtgagaatgttatggaactgaaataataagaagagaaatgagcattttatgaaaga-nnnnnnngtcatgtataagatattgtgt 299  Q
    |||||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||| ||||||||||||        |||||||||||||| ||||||    
T  42861595 ttgatgaacataaatgtgagatcgttatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttgtcatgtataagatgttgtgt 42861694  T
Q  300 tgttactttctgtgtggttgcctaa 324  Q
    | |||||||| ||||||||| ||||    
T  42861695 tattactttcagtgtggttgtctaa 42861719  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 324
Target Start/End: Complemental strand, 18472914 - 18472790
Alignment:
Q  201 ttgatgaaaataaatgtgagaatgttatggaactgaaataataagaagagaaatgagcattttatgaaaga-nnnnnnngtcatgtataagatattgtgt 299  Q
    |||||||| |||||||| |||  ||||| ||||||||||||||||||||||||||||| ||||||||||||        |||||||||||||| ||||||    
T  18472914 ttgatgaacataaatgtcagatcgttatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttgtcatgtataagatgttgtgt 18472815  T
Q  300 tgttactttctgtgtggttgcctaa 324  Q
    | ||||||||||| |||||||||||    
T  18472814 tattactttctgtctggttgcctaa 18472790  T

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Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 201 - 324
Target Start/End: Complemental strand, 13773409 - 13773285
Alignment:
Q  201 ttgatgaaaataaatgtgagaatgttatggaactgaaataataagaagagaaatgagcattttatgaaaga-nnnnnnngtcatgtataagatattgtgt 299  Q
    |||||||| |||||||| |||  ||||| ||||||||||||||||||||||||||||| ||||||||||||        |||||||||| ||| ||| ||    
T  13773409 ttgatgaatataaatgtcagatcgttatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttgtcatgtataggatgttgagt 13773310  T
Q  300 tgttactttctgtgtggttgcctaa 324  Q
    | |||||||||||||||||||||||    
T  13773309 tattactttctgtgtggttgcctaa 13773285  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 324
Target Start/End: Complemental strand, 28267139 - 28267015
Alignment:
Q  201 ttgatgaaaataaatgtgagaatgttatggaactgaaataataagaagagaaatgagcattttatgaaaga-nnnnnnngtcatgtataagatattgtgt 299  Q
    |||||||| ||||||||||||  ||||| ||||| ||||||||||||| |||||||||  |||||||||||        |||||||| | ||| ||||||    
T  28267139 ttgatgaacataaatgtgagatcgttatcgaactaaaataataagaagggaaatgagccctttatgaaagatttcttttgtcatgtacatgatgttgtgt 28267040  T
Q  300 tgttactttctgtgtggttgcctaa 324  Q
    | |||||||||||||||||||||||    
T  28267039 tattactttctgtgtggttgcctaa 28267015  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 324
Target Start/End: Complemental strand, 35670774 - 35670654
Alignment:
Q  201 ttgatgaaaataaatgtgagaatgttatggaactgaaataataagaagagaaatgagcattttatgaaagannnnnnn-gtcatgtataagatattgtgt 299  Q
    |||||||| ||||||||||||  |||||    ||||||||||||| ||| |||||||| ||||||||||||        |||||||||||||| | ||||    
T  35670774 ttgatgaacataaatgtgagatcgttat----ctgaaataataagcagataaatgagccttttatgaaagatttcttttgtcatgtataagatgtcgtgt 35670679  T
Q  300 tgttactttctgtgtggttgcctaa 324  Q
    | |||||||||||||||||||||||    
T  35670678 tattactttctgtgtggttgcctaa 35670654  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 324
Target Start/End: Complemental strand, 12774424 - 12774295
Alignment:
Q  201 ttgatgaaaataaatgtgagaatgttatggaactgaaataataagaagag-----aaatgagcattttatgaaaga-nnnnnnngtcatgtataagatat 294  Q
    |||||||| ||||||||||||  ||||| ||||| ||||||||| |||||     |||||||| ||||||||||||        |||||||| | ||| |    
T  12774424 ttgatgaacataaatgtgagatcgttatcgaactaaaataataataagagaaattaaatgagccttttatgaaagatttcttttgtcatgtacatgatgt 12774325  T
Q  295 tgtgttgttactttctgtgtggttgcctaa 324  Q
    ||| || |||||||||||||||||||||||    
T  12774324 tgtattattactttctgtgtggttgcctaa 12774295  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 41340240 - 41340181
Alignment:
Q  212 aaatgtgagaatgttatggaactgaaataataagaagagaaatgagcattttatgaaaga 271  Q
    |||| ||||| |||||| |||| |||||||||| ||||||||| ||| ||||||||||||    
T  41340240 aaatttgagattgttatcgaacagaaataataataagagaaataagctttttatgaaaga 41340181  T

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