View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2829_high_5 (Length: 270)
Name: NF2829_high_5
Description: NF2829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2829_high_5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 7622371 - 7622119
Alignment:
| Q |
18 |
atttgcatgcctcaaagtttgtatttctagatcaattgataatgggttcattagtaatttgggaaggtatatactgtgattaaaagagacttgtaataac |
117 |
Q |
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| T |
7622371 |
atttgcatgcctcaaagtttgtatttctagatcaattgataatgggttcattagtaatttgggaaggtatatactgtgattaaaagagacttgtaataac |
7622272 |
T |
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| Q |
118 |
taatatgcttcatcttatatgtattcggaagaattttgccacctgttactacaattctatctggttcgagagattagctgcacacgagttgcagagtata |
217 |
Q |
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| T |
7622271 |
taatatgcttcatcttatatgtattcggaagaattttgccacctgttactacaattctatctggttcgagagattagctgcacacgagttgcagagtata |
7622172 |
T |
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| Q |
218 |
tctagtttacgcacataaaatgttaactttgtattgacggagtctaatggtct |
270 |
Q |
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| T |
7622171 |
tctagtttacacacataaaatgttaactttgtattgacggagtctaatggtct |
7622119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 7634056 - 7633988
Alignment:
| Q |
18 |
atttgcatgcctcaaagtttgtatt---tctagatcaattgataatgggttcattagtaatttgggaag |
83 |
Q |
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| T |
7634056 |
atttgcatgcctcaaagtttgtattatttctagatcaattgataatggtttcatttgtaatttgggaag |
7633988 |
T |
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