View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2829_high_7 (Length: 216)
Name: NF2829_high_7
Description: NF2829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2829_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 20087621 - 20087819
Alignment:
| Q |
7 |
acatcatcaagcctcttcatgtcaaatcatcattaaaaaataattttcattttgccattttaagcattcacacaatacaaactataaaataacattatca |
106 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20087621 |
acatcctcaagcctcttcatgtcaaatcatcattaaaaaataattttcattttgccattttaagcattcacacaatacaaactataaaatatcattatca |
20087720 |
T |
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| Q |
107 |
catattttccctcttcaattcaaaattcaaacttaaaattttttcaaatacttctttccctcctacttttcctcactattaacattttatttcttctct |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20087721 |
catattttccctcttcaattcaaaattcaaacttaaaattttttcaaatccttctttccctcctacttttcctcactattaacattttatttcttctct |
20087819 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 34024366 - 34024517
Alignment:
| Q |
13 |
tcaagcctcttcatgtcaaatcatcattaaaaaataattttcattttgccattttaagcattcacacaatacaaactataaaataacattatcacatatt |
112 |
Q |
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||||||| |||||||||| |||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
34024366 |
tcaagccccttcatgtcacatcaccattaaaaactaattttatttttgccattttaagcattcacacaatacaaacaataaaatatcattatcacatatt |
34024465 |
T |
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| Q |
113 |
ttccctcttcaattcaaaattcaaacttaaaattttttcaaatacttctttc |
164 |
Q |
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|||||||||||||||||| |||||| || ||| |||||||||| ||||||| |
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| T |
34024466 |
ttccctcttcaattcaaatttcaaatttcaaaatttttcaaatcattctttc |
34024517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 1062043 - 1061892
Alignment:
| Q |
13 |
tcaagcctcttcatgtcaaatcatcattaaaaaataattttcattttgccattttaagcattcacacaatacaaactataaaataacattatcacatatt |
112 |
Q |
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||||||| |||||||||| |||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
1062043 |
tcaagccccttcatgtcacatcaccattaaaaactaattttatttttgccattttaagcattcacacaatacaaacaataaaatatcattatcacatatt |
1061944 |
T |
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| Q |
113 |
ttccctcttcaattcaaaattcaaacttaaaattttttcaaatacttctttc |
164 |
Q |
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|||||||||||||||||| |||||| || ||| |||||||||| ||||||| |
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| T |
1061943 |
ttccctcttcaattcaaatttcaaatttcaaaatttttcaaatcattctttc |
1061892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 31954069 - 31953925
Alignment:
| Q |
25 |
atgtcaaatcatcattaaaaaataattttcattttgccattttaagcattcacacaatacaaactataaaataacattatcacatattttccctcttcaa |
124 |
Q |
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|||||| |||| ||||||||||||||||| | |||||| |||||||||||||||||||||||| |||||||| | |||||||| | |||||||| |||| |
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| T |
31954069 |
atgtcacatcaccattaaaaaataattttaaagttgccactttaagcattcacacaatacaaacaataaaatatctttatcacacaatttccctcctcaa |
31953970 |
T |
|
| Q |
125 |
ttcaaaattcaaacttaaaattttttcaaatacttctttccctcctactttt |
176 |
Q |
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|||||||||| ||| |||||||||| |||||||||||||||||||| |
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|
| T |
31953969 |
ttcaaaattc-------aaaatttttcaaatccttctttccctcctactttt |
31953925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 7e-45; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 14935750 - 14935901
Alignment:
| Q |
13 |
tcaagcctcttcatgtcaaatcatcattaaaaaataattttcattttgccattttaagcattcacacaatacaaactataaaataacattatcacatatt |
112 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |
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| T |
14935750 |
tcaagccccttcatgtcacatcaccattaaaaactaattttatttttgccattttaagcattcacacaatacaaacaataaaatatcatcatcacatatt |
14935849 |
T |
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| Q |
113 |
ttccctcttcaattcaaaattcaaacttaaaattttttcaaatacttctttc |
164 |
Q |
| |
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|||||||||||||||||| |||||| || ||| |||||||||| ||||||| |
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|
| T |
14935850 |
ttccctcttcaattcaaatttcaaattttaaaatttttcaaatcattctttc |
14935901 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 6800185 - 6800255
Alignment:
| Q |
85 |
aaactataaaataacattatcacatattttccctcttcaattcaaaattcaaacttaaaattttttcaaat |
155 |
Q |
| |
|
|||| |||||||| |||||||||| |||||||||||||||||||||||||||| || || |||||| |||| |
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| T |
6800185 |
aaacaataaaatatcattatcacacattttccctcttcaattcaaaattcaaatttcaattttttttaaat |
6800255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 6799601 - 6799653
Alignment:
| Q |
56 |
ttttgccattttaagcattcacacaatacaaactataaaataacattatcaca |
108 |
Q |
| |
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|||| |||||||||||||| ||||||| ||||| |||||||| |||||||||| |
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| T |
6799601 |
ttttaccattttaagcatttacacaattcaaacaataaaatatcattatcaca |
6799653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 34977344 - 34977486
Alignment:
| Q |
13 |
tcaagcctcttcatgtcaaatcatcattaaaaaataattttcattttgccattttaagcattcacacaatacaaactataaaataacattatcacatatt |
112 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||| ||||||| |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
34977344 |
tcaagccccttcatgtcacatcaccattaaaaattaattttattttttccattttaagcattcacacaatacaaacaataaaatatcattatcacatatt |
34977443 |
T |
|
| Q |
113 |
ttccctcttcaattcaaaattcaaacttaaaattttttcaaat |
155 |
Q |
| |
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|||||||||||||||||| |||||| || ||| |||||||||| |
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|
| T |
34977444 |
ttccctcttcaattcaaatttcaaatttcaaaatttttcaaat |
34977486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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