View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2829_low_2 (Length: 467)
Name: NF2829_low_2
Description: NF2829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2829_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Complemental strand, 8408278 - 8407843
Alignment:
| Q |
18 |
atttgatattcagccaaagcttgtctaagttcctctcttgttacataactgaacagtcacccaaacaaaacttaagataagcaagaatctgagaaataga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8408278 |
atttgatattcagccaaagcttgtctaagttcctctcttgttacataactgaacagtcacccaaacaaaacttaaggtaagcaagaatctgagaaataga |
8408179 |
T |
|
| Q |
118 |
cgaaaaatctgataatactgaatttttatggaccaaatctgtcttgattttatcatctgaattacttgttaatcaagcaatgtgtgtcatagttaaggat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8408178 |
cgaaaaatctgataatactgaatttttatggaccaaatctgtcttgattttatcatctgaattacttgttaatcaagcaatgtgtgtcatagttaaggat |
8408079 |
T |
|
| Q |
218 |
aaagcaaaggaaccaaatactgacccgctgttatccttgtcaaagtattgaaaagccttgaacaaattctcttccctctcaagtttatgccggtttattg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8408078 |
aaagcaaaggaaccaaatactgacccgctgttatccttgtcaaagtattgaaaagccttgaacaaattctcttccctctcaagtttatgccggtttattg |
8407979 |
T |
|
| Q |
318 |
tggcagtaatgaattcatgatagtcaatagttccattcttgtcaacatcagcctgaccaaacatgtgaattaggaaagctatgtaagttcttattttata |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8407978 |
tggcagtaatgaattcatgatagtcaatagttccattcttgtcaacatcagcctgaccaaacatgtgaattaggaaaactatgtaagttcttattttata |
8407879 |
T |
|
| Q |
418 |
ctttcttcatgaagaaaaaagaccagaaacactagt |
453 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8407878 |
ctttcttcatgaagaaaaaagatcagaaacactagt |
8407843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University