View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2829_low_3 (Length: 349)
Name: NF2829_low_3
Description: NF2829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2829_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 203 - 332
Target Start/End: Complemental strand, 1028403 - 1028274
Alignment:
| Q |
203 |
caaaagtcaactaattttcttttgtatttacgagccagcactgatgaagtaatcgttgaactcatgagaacaaagatgaccatgagcttttgcttccaag |
302 |
Q |
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| T |
1028403 |
caaaagtcaactaattttcttttgtatttacgagccagcactgatgaagtaatcgttgaactcatgagaacaaagatgaccatgagcttttgcttccaag |
1028304 |
T |
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| Q |
303 |
ggctaacatcgatcgtatttggtatctctg |
332 |
Q |
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| T |
1028303 |
ggccaacatcgatcgtatttggtatctctg |
1028274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 1033688 - 1033609
Alignment:
| Q |
126 |
ttccaatgaacgtcttctacacagaccttcccatagaaatgaagcagaatttggaagcagcaactgccagcaatcaccaa |
205 |
Q |
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| T |
1033688 |
ttccaatgaacgtcttctaccaagatcttcccacagaaatgaagcagaatttggaagcagcaactgccaggaatcaccaa |
1033609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 1033757 - 1033698
Alignment:
| Q |
18 |
caatctgctacgtgca-aggttggtgatcagaaatttcatcgacatcgtacttcagcatc |
76 |
Q |
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| T |
1033757 |
caatctgctacgtgcagaggttgatgatcagaaatttcatcgataacgtacttcagcatc |
1033698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 74 - 203
Target Start/End: Original strand, 50832377 - 50832502
Alignment:
| Q |
74 |
atcgtacttcagggatttcattgggtcagttccatctaccaagagttccaacttccaatgaacgtcttctacacagaccttcccatagaaatgaagca-- |
171 |
Q |
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| T |
50832377 |
atcgtacttcagcgatttcattgggtcagttccatctaccaagag-------ttccaataaacgtctcctaccaagatcttcccacagaaatgaagcagc |
50832469 |
T |
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| Q |
172 |
-gaatttggaagcagcaactgccagcaatcacc |
203 |
Q |
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| T |
50832470 |
ggaattcggaagcagcaactgccaggaatcacc |
50832502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 4516227 - 4516149
Alignment:
| Q |
127 |
tccaatgaacgtcttctacacagaccttcccatagaaatgaagcagaatttggaagcagcaactgccagcaatcaccaa |
205 |
Q |
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| T |
4516227 |
tccaatgaacgtcttctaccaagatcttcccacagaaatgaagcagaatttggaagcagcagctgccaggaatcaccaa |
4516149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 50832354 - 50832389
Alignment:
| Q |
38 |
tggtgatcagaaatttcatcgacatcgtacttcagc |
73 |
Q |
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| T |
50832354 |
tggtgatcagaaatttcatcgatatcgtacttcagc |
50832389 |
T |
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