View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2829_low_4 (Length: 316)
Name: NF2829_low_4
Description: NF2829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2829_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 7 - 306
Target Start/End: Original strand, 26752694 - 26752993
Alignment:
| Q |
7 |
aaagtgttgagcgttttccgttaacaggttggtcacgatttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaaccatatggc |
106 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26752694 |
aaagtgttgagcgttttccattaactggttggtcacgatttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaaccatatggc |
26752793 |
T |
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| Q |
107 |
aaaggaataagcattttgtcctacagggtagaaacctgctgtgaaggnnnnnnngggggaaagtatgatgttttgttcagggttttctactgagagggtg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26752794 |
aaaggaataagcattttgtcctacagggtagaaacctgctgtgaaggtttttttgggggagagtatgatgttttgttcagggttttctactgagagggtg |
26752893 |
T |
|
| Q |
207 |
aaggatgaggtgtgttgaaaatggaagagaaagatgagaaaagttaagaagattggtgatggtgaaggggacattgttggaatcttggggggtgtgatga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26752894 |
aaggatgaggtgtgttgaaaatggaagagaaagatgagaaaagttaagaagattggtgatggtgaaggggacattgttggaatcttggggggtgtgatga |
26752993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 151
Target Start/End: Original strand, 26700304 - 26700448
Alignment:
| Q |
7 |
aaagtgttgagcgttttccgttaacaggttggtcacgatttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaaccatatggc |
106 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
26700304 |
aaagtgttgagcgttttccgttaactggttggtcacgatttgccacccaaacaacggtagcgttgttgagatttttgtgtttttgggtgaaccatatagc |
26700403 |
T |
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| Q |
107 |
aaaggaataagcattttgtcctacagggtagaaacctgctgtgaa |
151 |
Q |
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| T |
26700404 |
aaaggaataagcattttctccaacagggtagaaacctgctgtgaa |
26700448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 26677131 - 26677381
Alignment:
| Q |
7 |
aaagtgttgagcgttttccgttaacaggttggtcacgatttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaaccatatggc |
106 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||| |||||||||||||| |
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| T |
26677131 |
aaagtgttgagcgttttccgttaactggttggtcacgatttgccatccaaacaacagtagcgttgtttagatttttgtgtatttgagtgaaccatatggc |
26677230 |
T |
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| Q |
107 |
aaaggaataagcattttgtcctacagggtagaaacctgctgtgaaggnnnnnnngggggaaagtatgatgttttgttcagggttttctactgagagggtg |
206 |
Q |
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||||||||||||||||| || || | || || ||||| || || | ||| || | ||| |||| |||||| || ||||| |||||||||| | |
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| T |
26677231 |
aaaggaataagcattttcaccgacggaataaaagcctgcggtaaatgtacctttgggtgacattataatgtcttgttcgggtttttccactgagagggag |
26677330 |
T |
|
| Q |
207 |
aaggatgaggtgtgttgaaaatggaagagaaagatgagaaaagttaagaag |
257 |
Q |
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|| ||||| | |||||||||||||||| |||||||||||||| |||||| |
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| T |
26677331 |
aatgatgatgaatgttgaaaatggaagaacaagatgagaaaagtgaagaag |
26677381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 7 - 257
Target Start/End: Complemental strand, 26688959 - 26688709
Alignment:
| Q |
7 |
aaagtgttgagcgttttccgttaacaggttggtcacgatttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaaccatatggc |
106 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||| |||||||||||||| |
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| T |
26688959 |
aaagtgttgagcgttttccgttaactggttggtcacgatttgccatccaaacaacagtagcgttgtttagatttttgtgtatttgagtgaaccatatggc |
26688860 |
T |
|
| Q |
107 |
aaaggaataagcattttgtcctacagggtagaaacctgctgtgaaggnnnnnnngggggaaagtatgatgttttgttcagggttttctactgagagggtg |
206 |
Q |
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||||||||||||||||| || || | || || ||||| || || | ||| || | ||| |||| |||||| || ||||| |||||||||| | |
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| T |
26688859 |
aaaggaataagcattttcaccgacggaataaaagcctgcggtaaatgtacctttgggtgacattataatgtcttgttcgggtttttccactgagagggag |
26688760 |
T |
|
| Q |
207 |
aaggatgaggtgtgttgaaaatggaagagaaagatgagaaaagttaagaag |
257 |
Q |
| |
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|| ||||| | |||||||||||||||| |||||||||||||| |||||| |
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| T |
26688759 |
aatgatgatgaatgttgaaaatggaagaacaagatgagaaaagtgaagaag |
26688709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 26693111 - 26692995
Alignment:
| Q |
7 |
aaagtgttgagcgttttccgttaacaggttggtcacgatttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaaccatatggc |
106 |
Q |
| |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||| |||||||||||||| |||||||||||||| |
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| T |
26693111 |
aaagtcttgagcattttccgttaacaggttggtcacgatttgccatccaaacaacggtagcgttggcgaggtttttgtgtttttgagtgaaccatatggc |
26693012 |
T |
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| Q |
107 |
aaaggaataagcatttt |
123 |
Q |
| |
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|| ||||||||||||| |
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| T |
26693011 |
gaatgaataagcatttt |
26692995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 26745751 - 26745867
Alignment:
| Q |
7 |
aaagtgttgagcgttttccgttaacaggttggtcacgatttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaaccatatggc |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| || |||||||||||||| |||||||||||||| |
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| T |
26745751 |
aaagtgttgagcgttttccgttaacaggttggtcacgattagccatccaaacaacggtaggattggaaaggtttttgtgtttttgagtgaaccatatggc |
26745850 |
T |
|
| Q |
107 |
aaaggaataagcatttt |
123 |
Q |
| |
|
|| ||||||||||||| |
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| T |
26745851 |
gaatgaataagcatttt |
26745867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 26715477 - 26715592
Alignment:
| Q |
7 |
aaagtgttgagcgttttccgttaacaggttggtcacgatttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaaccatatggc |
106 |
Q |
| |
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||||||| |||||||| |||||||| |||||||||||||||||||||||||||| ||||| ||| |||| |||||||||||||| |||||||||||||| |
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| T |
26715477 |
aaagtgtcgagcgttt-ccgttaactggttggtcacgatttgccatccaaacaacggtagcattggtgaggtttttgtgtttttgagtgaaccatatggc |
26715575 |
T |
|
| Q |
107 |
aaaggaataagcatttt |
123 |
Q |
| |
|
|| ||||||||||||| |
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| T |
26715576 |
gaatgaataagcatttt |
26715592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 26738716 - 26738842
Alignment:
| Q |
7 |
aaagtgttgagcgttttccgttaacaggttggtcacgatttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaaccatatggc |
106 |
Q |
| |
|
||||||| |||||||||||||| || || || |||||||||||||||||||||| ||||| ||| |||| |||||||||||||| |||||||||||||| |
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| T |
26738716 |
aaagtgtcgagcgttttccgtttactggctgttcacgatttgccatccaaacaacggtagcattggtgaggtttttgtgtttttgagtgaaccatatggc |
26738815 |
T |
|
| Q |
107 |
aaaggaataagcattttgtcctacagg |
133 |
Q |
| |
|
|| ||||||||||||| |||||||| |
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| T |
26738816 |
gaatgaataagcattttcgcctacagg |
26738842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 26735461 - 26735520
Alignment:
| Q |
7 |
aaagtgttgagcgttttccgttaacaggttggtcacgatttgccatccaaacaatggtag |
66 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| |||||||||||||||||||||| ||||| |
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|
| T |
26735461 |
aaagtgttgagcgttttccattaactggttgatcacgatttgccatccaaacaacggtag |
26735520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 26700486 - 26700562
Alignment:
| Q |
189 |
ttttctactgagagggtgaaggatgaggtgtgttgaaaatggaagagaaagatgagaaaagttaagaagattggtga |
265 |
Q |
| |
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||||| |||||||||| ||| ||||| | ||| |||||| ||||||| |||||||||| ||| || ||||||||||| |
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| T |
26700486 |
ttttcaactgagagggagaatgatgatgagtgctgaaaacggaagaggaagatgagaatagtgaacaagattggtga |
26700562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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