View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2829_low_8 (Length: 255)

Name: NF2829_low_8
Description: NF2829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2829_low_8
NF2829_low_8
[»] chr6 (5 HSPs)
chr6 (15-129)||(23260631-23260745)
chr6 (15-129)||(34636270-34636384)
chr6 (15-129)||(25005227-25005341)
chr6 (15-129)||(32450316-32450430)
chr6 (183-249)||(13777096-13777162)
[»] chr3 (6 HSPs)
chr3 (15-129)||(5004773-5004887)
chr3 (15-128)||(16975337-16975450)
chr3 (15-126)||(46404618-46404729)
chr3 (29-129)||(11967944-11968043)
chr3 (176-255)||(43278180-43278260)
chr3 (178-235)||(21299291-21299345)
[»] chr1 (7 HSPs)
chr1 (21-129)||(9537409-9537517)
chr1 (15-129)||(35762103-35762219)
chr1 (21-99)||(16074800-16074879)
chr1 (146-234)||(16074920-16075010)
chr1 (183-255)||(18473923-18473995)
chr1 (15-67)||(37667265-37667317)
chr1 (89-128)||(37667232-37667271)
[»] chr5 (4 HSPs)
chr5 (15-126)||(536897-537008)
chr5 (29-128)||(4558026-4558125)
chr5 (15-93)||(536813-536891)
chr5 (141-234)||(4557913-4558008)
[»] scaffold0413 (1 HSPs)
scaffold0413 (15-129)||(8923-9037)
[»] scaffold1838 (1 HSPs)
scaffold1838 (21-126)||(263-368)
[»] chr7 (9 HSPs)
chr7 (15-126)||(15873993-15874104)
chr7 (21-129)||(22077720-22077828)
chr7 (19-129)||(21491550-21491659)
chr7 (26-93)||(18367412-18367479)
chr7 (21-129)||(48576418-48576527)
chr7 (218-255)||(48576605-48576642)
chr7 (15-68)||(9993374-9993427)
chr7 (161-226)||(12911639-12911704)
chr7 (141-226)||(22077845-22077933)
[»] chr4 (2 HSPs)
chr4 (21-129)||(28969236-28969344)
chr4 (11-234)||(49499091-49499319)
[»] chr2 (6 HSPs)
chr2 (15-83)||(32735391-32735459)
chr2 (154-229)||(29270864-29270939)
chr2 (153-255)||(12774794-12774899)
chr2 (176-255)||(41340604-41340684)
chr2 (21-91)||(29270722-29270792)
chr2 (153-255)||(28267535-28267641)
[»] chr8 (1 HSPs)
chr8 (15-99)||(35839184-35839268)


Alignment Details
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 23260745 - 23260631
Alignment:
Q  15 aagaacaaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatattttatatgatgtttgtatgataatg 114  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23260745 aagaacaaaacaactaaaatatgaattcatatggtaaaatttagccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatg 23260646  T
Q  115 ttatgtagaatgaca 129  Q
    |||||| ||||||||    
T  23260645 ttatgtggaatgaca 23260631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 34636270 - 34636384
Alignment:
Q  15 aagaacaaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatattttatatgatgtttgtatgataatg 114  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  34636270 aagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatg 34636369  T
Q  115 ttatgtagaatgaca 129  Q
    |||||| | ||||||    
T  34636370 ttatgtggcatgaca 34636384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 25005227 - 25005341
Alignment:
Q  15 aagaacaaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatattttatatgatgtttgtatgataatg 114  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||     
T  25005227 aagaacaaaacaactaaaataagaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatt 25005326  T
Q  115 ttatgtagaatgaca 129  Q
    |||||| ||||||||    
T  25005327 ttatgtggaatgaca 25005341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 32450430 - 32450316
Alignment:
Q  15 aagaacaaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatattttatatgatgtttgtatgataatg 114  Q
    ||||||||||||| ||||||||||||| |||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  32450430 aagaacaaaacaactaaaatatgaattcatatggtaaattttaactttttataaaagttattagtttaattatattttatatgatgtgtgtatgataatg 32450331  T
Q  115 ttatgtagaatgaca 129  Q
    |||||| ||||||||    
T  32450330 ttatgtggaatgaca 32450316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 13777162 - 13777096
Alignment:
Q  183 tttttgataaactaaagaaatgaaaaatatgaaaatgtgagttttatgaaaaggatattaatgttag 249  Q
    ||||||| |||| ||||||| ||||||||||| ||||||||| |||| |||||| ||| ||| ||||    
T  13777162 tttttgaaaaaccaaagaaaggaaaaatatgataatgtgagtattataaaaagggtataaatcttag 13777096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 5004887 - 5004773
Alignment:
Q  15 aagaacaaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatattttatatgatgtttgtatgataatg 114  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  5004887 aagaacaaaacaactaaaatatgaatttatatggtgaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatg 5004788  T
Q  115 ttatgtagaatgaca 129  Q
    |||||| ||||||||    
T  5004787 ttatgtggaatgaca 5004773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 16975337 - 16975450
Alignment:
Q  15 aagaacaaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatattttatatgatgtttgtatgataatg 114  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||     
T  16975337 aagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatt 16975436  T
Q  115 ttatgtagaatgac 128  Q
    |||||| |||||||    
T  16975437 ttatgtggaatgac 16975450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 46404729 - 46404618
Alignment:
Q  15 aagaacaaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatattttatatgatgtttgtatgataatg 114  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||    
T  46404729 aagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatatctgtatgataatg 46404630  T
Q  115 ttatgtagaatg 126  Q
    || ||| |||||    
T  46404629 ttttgtggaatg 46404618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 11968043 - 11967944
Alignment:
Q  29 taaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatattttatatgatgtttgtatgataatgttatgtagaatgac 128  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| | ||||||  ||||||||||    
T  11968043 taaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatacgatgtgtgtat-aaaatgttccgtagaatgac 11967945  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 43278260 - 43278180
Alignment:
Q  176 tgttagatttttgataaactaaagaaatgaaaaata-tgaaaatgtgagttttatgaaaaggatattaatgttagaaataa 255  Q
    |||||||||||||||||| || | ||| |||||| | || |||||||||||||||||||| ||||| ||| ||||||||||    
T  43278260 tgttagatttttgataaattagaaaaaggaaaaaaaatggaaatgtgagttttatgaaaatgatataaattttagaaataa 43278180  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 21299291 - 21299345
Alignment:
Q  178 ttagatttttgataaactaaagaaatgaaaaatatgaaaatgtgagttttatgaaaag 235  Q
    |||||| ||||||||| ||||||||   |||| |||||||||||||||||||||||||    
T  21299291 ttagatctttgataaattaaagaaa---aaaaaatgaaaatgtgagttttatgaaaag 21299345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 9537517 - 9537409
Alignment:
Q  21 aaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatattttatatgatgtttgtatgataatgttatgt 120  Q
    ||||||| |||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9537517 aaaacaagtaaaatataaatttatattgtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgttatgt 9537418  T
Q  121 agaatgaca 129  Q
    |||||||||    
T  9537417 agaatgaca 9537409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 35762219 - 35762103
Alignment:
Q  15 aagaacaaaacaattaaaatatgaatttatatggtaaaatttaaccttttat--aaaggttattagtttaattatattttatatgatgtttgtatgataa 112  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||| ||||||||||||||||| ||||||||||    
T  35762219 aagaacaaaacaactaaaatatgaatttatatggtaaaatttaaccttttataaaaaagttattagtttaactatattttatatgatgtgtgtatgataa 35762120  T
Q  113 tgttatgtagaatgaca 129  Q
    |||||||| ||||||||    
T  35762119 tgttatgtggaatgaca 35762103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 16074800 - 16074879
Alignment:
Q  21 aaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattag-tttaattatattttatatgat 99  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  16074800 aaaacaattaaaatatgaattcatatgttaaaatttaatcttttataaaagttattagatttaattatattttatatgat 16074879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 234
Target Start/End: Original strand, 16074920 - 16075010
Alignment:
Q  146 tatatgttttttgtgatgttggaaaagtagtgttagatttttg--ataaactaaagaaatgaaaaatatgaaaatgtgagttttatgaaaa 234  Q
    |||| ||||||| | || |||| |||| ||||||||||||||   |||||||||||||||||||||||||||||||||||||| |||||||    
T  16074920 tataggtttttttttatattgggaaagaagtgttagattttttttataaactaaagaaatgaaaaatatgaaaatgtgagtttcatgaaaa 16075010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 18473995 - 18473923
Alignment:
Q  183 tttttgataaactaaagaaatgaaaaatatgaaaatgtgagttttatgaaaaggatattaatgttagaaataa 255  Q
    ||||||| |||| ||||||| ||||||||||| ||||||||| |||| |||||||||| ||| ||||||||||    
T  18473995 tttttgaaaaaccaaagaaaggaaaaatatgataatgtgagtattataaaaaggatataaatcttagaaataa 18473923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 37667317 - 37667265
Alignment:
Q  15 aagaacaaaacaattaaaatatgaatttatatggtaaaatttaaccttttata 67  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  37667317 aagaacaaaacaactaaaatatgaattcatatgataaaatttaaccttttata 37667265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 37667271 - 37667232
Alignment:
Q  89 ttttatatgatgtttgtatgataatgttatgtagaatgac 128  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  37667271 ttttatatgatgtctgtatgataatgttatgtggaatgac 37667232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 536897 - 537008
Alignment:
Q  15 aagaacaaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatattttatatgatgtttgtatgataatg 114  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  536897 aagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatg 536996  T
Q  115 ttatgtagaatg 126  Q
    |||||| |||||    
T  536997 ttatgtggaatg 537008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 4558125 - 4558026
Alignment:
Q  29 taaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatattttatatgatgtttgtatgataatgttatgtagaatgac 128  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| ||||| ||||||||| ||||||||||    
T  4558125 taaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaatcatattttatataatgtgtgtataataatgttacgtagaatgac 4558026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 536813 - 536891
Alignment:
Q  15 aagaacaaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatatttta 93  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  536813 aagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 536891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 234
Target Start/End: Complemental strand, 4558008 - 4557913
Alignment:
Q  141 atgcctatatgtttttt-gtgatgttggaaaagtagtgttagatttt--tgataaactaaagaaatgaaaaatatgaaaatgtgagttttatgaaaa 234  Q
    |||| |||||||||||| ||| | |||  |||| |||||| ||||||  |||||||||||||||||| |||||||  |||| |||||||||||||||    
T  4558008 atgcatatatgtttttttgtggtattgagaaagaagtgttggattttgttgataaactaaagaaatg-aaaatatataaatatgagttttatgaaaa 4557913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 8923 - 9037
Alignment:
Q  15 aagaacaaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatattttatatgatgtttgtatgataatg 114  Q
    ||||||||||||| ||||||||||||| | ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||    
T  8923 aagaacaaaacaactaaaatatgaattcacatggtaaaatttaaccttttataacagttattagtttaattatattttatatgatgtctgtatgataatg 9022  T
Q  115 ttatgtagaatgaca 129  Q
    |||||| ||||||||    
T  9023 ttatgtggaatgaca 9037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 263 - 368
Alignment:
Q  21 aaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatattttatatgatgtttgtatgataatgttatgt 120  Q
    |||| ||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  263 aaaataattaaaatataaatctatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgt 362  T
Q  121 agaatg 126  Q
    ||||||    
T  363 agaatg 368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 15874104 - 15873993
Alignment:
Q  15 aagaacaaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatattttatatgatgtttgtatgataatg 114  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||    
T  15874104 aagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatatctgtatgataatg 15874005  T
Q  115 ttatgtagaatg 126  Q
    || ||| |||||    
T  15874004 ttttgtggaatg 15873993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 22077720 - 22077828
Alignment:
Q  21 aaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatattttatatgatgtttgtatgataatgttatgt 120  Q
    ||||||| |||||||| ||||||||||||||||||||||| |||  ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22077720 aaaacaactaaaatataaatttatatggtaaaatttaaccatttcaaaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgt 22077819  T
Q  121 agaatgaca 129  Q
    |||||||||    
T  22077820 agaatgaca 22077828  T

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Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 21491659 - 21491550
Alignment:
Q  19 acaaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatattttatatgatgtttgtatgataatgttat 118  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || || | ||||||||    
T  21491659 acaaaaaaactaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtgtgcat-aaaatgttat 21491561  T
Q  119 gtagaatgaca 129  Q
    |||||||||||    
T  21491560 gtagaatgaca 21491550  T

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Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 18367479 - 18367412
Alignment:
Q  26 aattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatatttta 93  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18367479 aattaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 18367412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 48576418 - 48576527
Alignment:
Q  21 aaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattag-tttaattatattttatatgatgtttgtatgataatgttatg 119  Q
    |||| |||||||||||||||||||||||||||||||||  | |||| || |||||||| ||||||||||| ||||||||||| ||||||||||||| |||    
T  48576418 aaaataattaaaatatgaatttatatggtaaaatttaatatcttattaaagttattagttttaattatatattatatgatgtgtgtatgataatgtgatg 48576517  T
Q  120 tagaatgaca 129  Q
     |||||||||    
T  48576518 cagaatgaca 48576527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 48576605 - 48576642
Alignment:
Q  218 tgtgagttttatgaaaaggatattaatgttagaaataa 255  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  48576605 tgtgagttttatgaaaaggatataaatgttagaaataa 48576642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 9993374 - 9993427
Alignment:
Q  15 aagaacaaaacaattaaaatatgaatttatatggtaaaatttaaccttttataa 68  Q
    ||||| ||||||||||||||||  |||||||||||||||| |||  ||||||||    
T  9993374 aagaagaaaacaattaaaatatttatttatatggtaaaatctaatattttataa 9993427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 12911704 - 12911639
Alignment:
Q  161 atgttggaaaagtagtgttagatttttgataaactaaagaaatgaaaaatatgaaaatgtgagttt 226  Q
    |||||||||||| | ||||| ||||||||| || ||||||||  | || |||||||||||||||||    
T  12911704 atgttggaaaagaaatgttacatttttgatgaattaaagaaaaaagaactatgaaaatgtgagttt 12911639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 22077845 - 22077933
Alignment:
Q  141 atgcctatatgtttttt-gtgatgttggaaaagtagtgttaga--tttttgataaactaaagaaatgaaaaatatgaaaatgtgagttt 226  Q
    |||| |||||||||||| ||| ||||||||||| ||||||| |  ||||| || || |||||||| || ||| ||||||||||||||||    
T  22077845 atgcatatatgtttttttgtggtgttggaaaagaagtgttacattttttttatgaattaaagaaaagagaaagatgaaaatgtgagttt 22077933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 28969344 - 28969236
Alignment:
Q  21 aaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatattttatatgatgtttgtatgataatgttatgt 120  Q
    ||||||| |||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||| ||||||||||| ||||||    
T  28969344 aaaacaactaaaatattaatttatatggtaaaatttaacattttataaaagttattagtttaattatattctatatgatgtgtgtatgataattttatgt 28969245  T
Q  121 agaatgaca 129  Q
    |||||||||    
T  28969244 agaatgaca 28969236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 49499091 - 49499319
Alignment:
Q  11 tgagaagaacaaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatattttatatgatgtttgtatgat 110  Q
    ||||||||| |||| || |||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||| |     
T  49499091 tgagaagaaaaaaaaaactaaaatatgaatttatatagtaaaatttaaccttttataaaaattattagtttaattatattttatataatgtgtgtat-aa 49499189  T
Q  111 aatgttatgtagaatgaca-----nnnnnnnnnnnatgcctatatgttttttgtgatgttggaaaagtagtgttagattt--ttgataaactaaagaaat 203  Q
     |||||| |||||||||||                |||| ||||||||||||||| | |||| |||| |||||| |||||  ||||||||||||||||||    
T  49499190 gatgttacgtagaatgacatttattttattttgatatgcatatatgttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaat 49499289  T
Q  204 gaaaaatatgaaaatgtgagttttatgaaaa 234  Q
    | |||||||  |||| |||||||||||||||    
T  49499290 g-aaaatatagaaatatgagttttatgaaaa 49499319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 32735459 - 32735391
Alignment:
Q  15 aagaacaaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaa 83  Q
    ||||||||||||| ||||||||| ||| ||||||| ||||||||||||||||||| | |||||||||||    
T  32735459 aagaacaaaacaactaaaatatgcattcatatggtgaaatttaaccttttataaaagatattagtttaa 32735391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 29270864 - 29270939
Alignment:
Q  154 ttttgtgatgttggaaaagtagtgttagatttttgataaactaaagaaatgaaaaatatgaaaatgtgagttttat 229  Q
    ||||| ||||||||||||||  ||||| |||||||||||| |||||||| | |||| ||| |||||||||||||||    
T  29270864 ttttgcgatgttggaaaagttatgttacatttttgataaattaaagaaagggaaaagatggaaatgtgagttttat 29270939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 12774899 - 12774794
Alignment:
Q  153 tttttgtgatgttggaaaagtagtgttagat--ttttgataaactaaagaaatgaaaaatatga-aaatgtgagttttatgaaaaggatattaatgttag 249  Q
    ||||||||||||| |||||| | ||||||||  |||||| |||| ||||||| ||||||||||| || ||||||| |||| |||||| ||| ||| ||||    
T  12774899 tttttgtgatgttagaaaagaaatgttagatttttttgaaaaaccaaagaaaggaaaaatatgataattgtgagtattataaaaagggtataaattttag 12774800  T
Q  250 aaataa 255  Q
    ||||||    
T  12774799 aaataa 12774794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 41340684 - 41340604
Alignment:
Q  176 tgttagatttttgataaactaaagaaatgaaaaata-tgaaaatgtgagttttatgaaaaggatattaatgttagaaataa 255  Q
    |||||||||||||||||| || | ||| |||||| | || |||||||||||||||||||| ||||| ||| ||||||||||    
T  41340684 tgttagatttttgataaattagaaaaaggaaaaaaaatggaaatgtgagttttatgaaaatgatataaattttagaaataa 41340604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 29270722 - 29270792
Alignment:
Q  21 aaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatattt 91  Q
    ||||||||||||||||| | ||| || |||||||||||  |||||||||  |||||| |||||||||||||    
T  29270722 aaaacaattaaaatatgtagttacatagtaaaatttaatattttataaaaattattattttaattatattt 29270792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 28267641 - 28267535
Alignment:
Q  153 tttttgtgatgttggaaaagtagtgttagattttt----gataaactaaagaaatgaaaaatatgaaaatgtgagttttatgaaaaggatattaatgtta 248  Q
    ||||||||||||| | |||| | ||||||||||||    || |||| ||||||| ||||||||||| ||||||||| || | |||||| ||| ||| |||    
T  28267641 tttttgtgatgttaggaaagaaatgttagatttttttttgaaaaaccaaagaaaggaaaaatatgataatgtgagtattgtaaaaagggtataaatttta 28267542  T
Q  249 gaaataa 255  Q
    |||||||    
T  28267541 gaaataa 28267535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 35839184 - 35839268
Alignment:
Q  15 aagaacaaaacaattaaaatatgaatttatatggtaaaatttaaccttttataaaggttattagtttaattatattttatatgat 99  Q
    ||||| ||||||||||||||||  ||||| |||||||||| |||  ||||||||  || |||| |||||||   |||||||||||    
T  35839184 aagaagaaaacaattaaaatatttatttacatggtaaaatctaatattttataagagtgattattttaattgagttttatatgat 35839268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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