View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2829_low_9 (Length: 236)

Name: NF2829_low_9
Description: NF2829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2829_low_9
NF2829_low_9
[»] chr1 (1 HSPs)
chr1 (68-134)||(39833009-39833075)
[»] chr5 (2 HSPs)
chr5 (68-134)||(2709302-2709367)
chr5 (1-65)||(2708834-2708898)


Alignment Details
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 39833075 - 39833009
Alignment:
Q  68 aacaatttgaaaagggcaaaacctgctggagtttcaaataatacaagcatcttatcacttttccaac 134  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39833075 aacaatttgaaaagggcaaaacctgctggtgtttcaaataatacaagcatcttatcacttttccaac 39833009  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 2709302 - 2709367
Alignment:
Q  68 aacaatttgaaaagggcaaaacctgctggagtttcaaataatacaagcatcttatcacttttccaac 134  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2709302 aacaatttgaaaagggcaaaacctgctggagtttcaaataatac-agcatcttatcacttttccaac 2709367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 2708834 - 2708898
Alignment:
Q  1 aggggaacttaagcagcacaccggtcccagtttttccttaatgatacaccccatttttgcatcag 65  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2708834 aggggaacttaagtagcacaccggtcccagtttttccttaatgatacaccccagttttgcatcag 2708898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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