View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2830_high_1 (Length: 1147)

Name: NF2830_high_1
Description: NF2830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2830_high_1
NF2830_high_1
[»] chr8 (4 HSPs)
chr8 (19-894)||(35820117-35820994)
chr8 (928-1052)||(35819971-35820095)
chr8 (526-630)||(39691679-39691783)
chr8 (526-630)||(39703738-39703842)
[»] chr2 (2 HSPs)
chr2 (93-166)||(26855248-26855321)
chr2 (107-163)||(30977557-30977613)
[»] chr3 (1 HSPs)
chr3 (125-176)||(28770158-28770209)
[»] chr6 (1 HSPs)
chr6 (93-166)||(34631291-34631364)
[»] chr7 (2 HSPs)
chr7 (117-176)||(29892870-29892929)
chr7 (125-176)||(41162854-41162905)


Alignment Details
Target: chr8 (Bit Score: 730; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 730; E-Value: 0
Query Start/End: Original strand, 19 - 894
Target Start/End: Complemental strand, 35820994 - 35820117
Alignment:
Q  19 gtaacaaaaatcattaagtattaagaaaaactgtttgagcaatataaatttgtctaaaatgtgtgtgacttgttaaattactctttacgtatagatacat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35820994 gtaacaaaaatcattaagtattaagaaaaactgtttgagcaatataaatttgtctagaatgtgtgtgacttgttaaattactctttacgtatagatacat 35820895  T
Q  119 ttaatattaacttttcatattacaaaacaaattgatagaattaataagtgatatatttnnnnnnnnnntgtatctacaaatttctagatgaccttatatt 218  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||    
T  35820894 ttaatattaacctttcatattacaaaacaaattgatagaattaataagtgatatattttaaaaaaaaatgtatctacaaatttctagatgaccttatatt 35820795  T
Q  219 tagagacataacnnnnnnnna-aaaatggtcttagaagtaaggacaaattgg-aacgataaactgaaaaattagtgagatagtacattagtagtatggtc 316  Q
    ||||||||||||          |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  35820794 tagagacataacttttttttttaaaatggtcttagaagcaaggacaaattgggaacgataaactgaaaaattagtgagatagtacattagtcgtatggtc 35820695  T
Q  317 catttattacaatgagtctcattaatttatcattatggagggataaacaaatagaattagactctcatttcatctcgttaaacgcggccacggcactata 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35820694 catttattacaatgagtctcattaatttatcattatggagggataaacaaatagaattagactctcatttcatctcgttaaacgcggccacggcactata 35820595  T
Q  417 aataagaattactagcctcactttttgtacatcactcaatatctcattttcaatttcaattcagtcattattaaaactataattagaatctccttatcaa 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35820594 aataagaattactagcctcactttttgtacatcactcaatatctcattttcaatttcaattcagtcattattaaaactagaattagaatctccttatcaa 35820495  T
Q  517 taatttgataatgatgagatcaagttttcttttgattctatcaatgctaattatcagtactccattgtcatctgcacataagtttaaggtcggtgggaaa 616  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35820494 taatttgataatgatgagatcaagttttcttttgattctatcaatgctaattatcagtactccattgttatctgcacataagtttaaggtcggtgggaaa 35820395  T
Q  617 gatggttggacagtgaaagcctcgggacactatgaagtctgggctagtagaatcaagtttctagtcagcgacacacttagtaagaacaatctgannnnnn 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  35820394 gatggttggacagtgaaagcctcgggacactatgaagtctgggctagtagaatcaagtttctagtcagcgacacacttagtaagaacaatctgatttttt 35820295  T
Q  717 natcttattttttcatctctaaatatcaaaactttatttacatcataataaattattctattgannnnnnncccttatgaaacagccaaattttatgtat 816  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  35820294 tatcttattttttcatctctaaatatcaaaactttatttacatcataataaattattctattgatttttttcccttatgaaacagccaaattttatgtat 35820195  T
Q  817 aatcaatatcaaaataaaaacttagcagaaaaaacatatgggttaaatgtatttttaatctgacattggatgttttca 894  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  35820194 aatcaatatcaaaataaaaacttagcagaaaaaacatatgggttaaatgtatttttaatccgacattggatcttttca 35820117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 928 - 1052
Target Start/End: Complemental strand, 35820095 - 35819971
Alignment:
Q  928 gccatcggatttattttttggttatgtatccacttttcagtattatttactagacagcatctattgagactttctttagcgatttagtttataatttgaa 1027  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35820095 gccatcggatttattttttggttatgtatccacttttcagtattatttactagacagcatctattgagactttctttagcgatttagtttataatttgaa 35819996  T
Q  1028 tatactaaaatgtagatcaacaact 1052  Q
    |||||||||||||||||||||||||    
T  35819995 tatactaaaatgtagatcaacaact 35819971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 526 - 630
Target Start/End: Complemental strand, 39691783 - 39691679
Alignment:
Q  526 aatgatgagatcaagttttcttttgattctatcaatgctaattatcagtactccattgtcatctgcacataagtttaaggtcggtgggaaagatggttgg 625  Q
    |||||||||||   ||||| |||||||| ||||||||||| || |||| ||| |||||||||||||| | |||||||| |||||||| ||  ||||||||    
T  39691783 aatgatgagatatggttttgttttgattgtatcaatgctagttctcagcacttcattgtcatctgcatacaagtttaatgtcggtggcaaccatggttgg 39691684  T
Q  626 acagt 630  Q
     ||||    
T  39691683 gcagt 39691679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 526 - 630
Target Start/End: Original strand, 39703738 - 39703842
Alignment:
Q  526 aatgatgagatcaagttttcttttgattctatcaatgctaattatcagtactccattgtcatctgcacataagtttaaggtcggtgggaaagatggttgg 625  Q
    |||||||||||   ||||| |||||||| ||||||||||| || |||| ||| |||||||||||||| | |||||||| |||||||| ||  ||||||||    
T  39703738 aatgatgagatatggttttgttttgattgtatcaatgctagttctcagcacttcattgtcatctgcatacaagtttaatgtcggtggcaaccatggttgg 39703837  T
Q  626 acagt 630  Q
     ||||    
T  39703838 gcagt 39703842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 26855321 - 26855248
Alignment:
Q  93 aaattactctttacgtatagatacatttaatattaacttttcatattacaaaacaaattgatagaattaataag 166  Q
    ||||||| |||| |||||||||| ||| ||| ||||||||||||||| ||| | | ||||||||||||||||||    
T  26855321 aaattaccctttgcgtatagatatattcaatgttaacttttcatattccaagatacattgatagaattaataag 26855248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 30977613 - 30977557
Alignment:
Q  107 gtatagatacatttaatattaacttttcatattacaaaacaaattgatagaattaat 163  Q
    ||||||||| |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  30977613 gtatagatatatttaatattaacttttcgtatttcaagataaattgatagtattaat 30977557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 28770209 - 28770158
Alignment:
Q  125 ttaacttttcatattacaaaacaaattgatagaattaataagtgatatattt 176  Q
    ||||||||||||||  |||||||||||||||| ||||||||| |||||||||    
T  28770209 ttaacttttcatataccaaaacaaattgatagtattaataagggatatattt 28770158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 34631364 - 34631291
Alignment:
Q  93 aaattactctttacgtatagatacatttaatattaacttttcatattacaaaacaaattgatagaattaataag 166  Q
    ||||||| |||| |||||||||| ||| ||| |||| |||||||||| ||| | | ||||||||||||||||||    
T  34631364 aaattaccctttgcgtatagatatattcaatgttaagttttcatattccaagatacattgatagaattaataag 34631291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 29892870 - 29892929
Alignment:
Q  117 atttaatattaacttttcatattacaaaacaaattgatagaattaataagtgatatattt 176  Q
    ||||||| ||||||||||||||  |||||||||||| ||| ||||||||| | |||||||    
T  29892870 atttaatgttaacttttcatataccaaaacaaattggtagtattaataaggggtatattt 29892929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 41162854 - 41162905
Alignment:
Q  125 ttaacttttcatattacaaaacaaattgatagaattaataagtgatatattt 176  Q
    ||||||||||||||| ||| |||||||| ||| ||||||||| |||||||||    
T  41162854 ttaacttttcatattccaagacaaattggtagtattaataagggatatattt 41162905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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