View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2830_high_5 (Length: 307)
Name: NF2830_high_5
Description: NF2830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2830_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 24615280 - 24615559
Alignment:
| Q |
18 |
catactcccgtatttctataaattatacatgttt-catatacaattttgtacagcataatatgtcagaaaatatacatcacaaaatatatgctttttatg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24615280 |
catactcccgtatttctataaattatacatgcttgcacatacaattttgtacagcataatatgtcagaaaatatacatcacaaaatatatactttttatg |
24615379 |
T |
|
| Q |
117 |
gatgaatgtatacatttttgtagtcatgtcggtgatggaaaaagtttcttcatggtattaattgttgttattggatttttctaattgtaagtatgtgaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24615380 |
gatgaatgtatacatttttgtagtcatgtcggtgatggaaaaagtttcttcatggtattaattgttgttattggatttttctaattgtaagtatgtgaaa |
24615479 |
T |
|
| Q |
217 |
aatggtccaagagtgtagccgaaacacgtcttagccttggcatgactaagacgcttttaatagtttgttgggttgttcat |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24615480 |
aatggtccaagagtgtagccgaaacacgtcttagccttggcatgactgagacgcttttaatagtttgttgggttgttcat |
24615559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University