View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2830_low_12 (Length: 226)
Name: NF2830_low_12
Description: NF2830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2830_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 2470911 - 2471101
Alignment:
| Q |
18 |
agatgcagtgaagatttgggtggaggaggagccacactatgatcactataataactcatgtgttggtggtgaatgtcttcattatacccaggtgatatgg |
117 |
Q |
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| T |
2470911 |
agatgcagtgaagatttgggtggaggaggagccacactatgatcactataataactcatgtgttggtggtgaatgtcttcattatacccaggtgatatgg |
2471010 |
T |
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| Q |
118 |
gaaaaatcacaacgtgttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgacccacctggtaacattg |
208 |
Q |
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| T |
2471011 |
gaaaaatcacaacgtgttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgacccacctggtaacattg |
2471101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 69 - 200
Target Start/End: Original strand, 2474209 - 2474340
Alignment:
| Q |
69 |
taactcatgtgttggtggtgaatgtcttcattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaagtgagatgtgataatggaggc |
168 |
Q |
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| T |
2474209 |
taactcatgtgttggtggtgaatgcctccattatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggagga |
2474308 |
T |
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| Q |
169 |
acattcattacttgcaattatgacccacctgg |
200 |
Q |
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| T |
2474309 |
acattcattacttgcaattacgacccccctgg |
2474340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 2486433 - 2486622
Alignment:
| Q |
22 |
gcagtgaagatttgggtggaggaggagccacactatgatcactataataactcatgtgttggtggt---gaatgtcttcattatacccaggtgatatggg |
118 |
Q |
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| T |
2486433 |
gcagtgaagttgtgggtggatgaagaaccatactttaatcactatgctaactcatgtattgatggtcatgaatgccaccattatactcaggttgtttggg |
2486532 |
T |
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| Q |
119 |
aaaaatcacaacgtgttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgacccacctggtaacattg |
208 |
Q |
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| T |
2486533 |
aaaaatcactacgtgttggatgtggcaaagtgaaatgtgataatggtggctcatttgttacttgcaattatgatccccctggtaacattg |
2486622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 2462593 - 2462696
Alignment:
| Q |
97 |
cattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaagtgagatgtg---ataatggaggcacattcattacttgcaattatgacc |
193 |
Q |
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| T |
2462593 |
cattatacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacc |
2462692 |
T |
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| Q |
194 |
cacc |
197 |
Q |
| |
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|||| |
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| T |
2462693 |
cacc |
2462696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 2466641 - 2466744
Alignment:
| Q |
97 |
cattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaagtgagatgtg---ataatggaggcacattcattacttgcaattatgacc |
193 |
Q |
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|||||||||||||| | ||| ||| ||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||| |||||||| |||| |
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| T |
2466641 |
cattatacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacc |
2466740 |
T |
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| Q |
194 |
cacc |
197 |
Q |
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|||| |
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| T |
2466741 |
cacc |
2466744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 3063377 - 3063301
Alignment:
| Q |
124 |
tcacaacgtgttggatgtggcaaagtgagatgtga---taatggaggcacattcattacttgcaattatgacccacc |
197 |
Q |
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||||||||||||||||||| ||||||||||||||| |||| |||| ||||||||||| |||||||| |||||||| |
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| T |
3063377 |
tcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
3063301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 2469994 - 2470066
Alignment:
| Q |
125 |
cacaacgtgttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgacccacc |
197 |
Q |
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||||||| ||||||||| |||||||| |||| |||| ||||| |||||||||||||||||||| |||||||| |
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| T |
2469994 |
cacaacggattggatgtgccaaagtgaaatgtaataacggaggaacattcattacttgcaattacgacccacc |
2470066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 2458054 - 2458117
Alignment:
| Q |
134 |
ttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgacccacc |
197 |
Q |
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| T |
2458054 |
ttggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatccacc |
2458117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 207
Target Start/End: Original strand, 2478778 - 2478936
Alignment:
| Q |
49 |
ccacactatgatcactataataactcatgtgttggtggtgaatgtcttcattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaag |
148 |
Q |
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||||||| |||| ||||| |||| |||| ||| ||||||||||| ||||| ||||||||| | ||| | |||| |||| ||||||||||||||| |
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| T |
2478778 |
ccacactttgataactatcttaacaaatgttttgatggtgaatgtcatcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaag |
2478877 |
T |
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| Q |
149 |
tgagatgtgataatggaggcacattcattacttgcaattatgacccacctggtaacatt |
207 |
Q |
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||| |||| ||||||| || ||||| ||||||| |||||| | || || ||||||||| |
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| T |
2478878 |
tgaaatgtaataatggtggaacatttgttacttgtaattattatcccccaggtaacatt |
2478936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 189
Target Start/End: Original strand, 2483282 - 2483422
Alignment:
| Q |
49 |
ccacactatgatcactataataactcatgtgttggtggtgaatgtcttcattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaag |
148 |
Q |
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||||||| |||| ||||| |||| |||| ||| ||||||||||| ||||| ||||||||| | ||| | |||| |||| ||||||||||||||| |
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| T |
2483282 |
ccacactttgataactatcttaacaaatgttttgatggtgaatgtcatcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaag |
2483381 |
T |
|
| Q |
149 |
tgagatgtgataatggaggcacattcattacttgcaattat |
189 |
Q |
| |
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||| |||| ||||||| || ||||| ||||||| |||||| |
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| T |
2483382 |
tgaaatgtaataatggtggaacatttgttacttgtaattat |
2483422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 18015943 - 18016019
Alignment:
| Q |
124 |
tcacaacgtgttggatgtggcaaagtgagatgtg---ataatggaggcacattcattacttgcaattatgacccacc |
197 |
Q |
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||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||| |||||||| |||||||| |
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| T |
18015943 |
tcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
18016019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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