View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2830_low_2 (Length: 450)
Name: NF2830_low_2
Description: NF2830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2830_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 31663429 - 31663878
Alignment:
| Q |
1 |
gagtttcaaaatatatttgacattggatgtgacacaggcttaccaggagcttcggttgaaaagatcccaatagtctcaatcacaagtggcaatatagttt |
100 |
Q |
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| T |
31663429 |
gagtttcaaaatatatttgacattggatgtgacacaggcttaccaggagcttcggttgaaaagatcccaatagtctcaatcacaagtggcaatagagttt |
31663528 |
T |
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| Q |
101 |
catgttcagtttgtcttgaggttgatttatccctactaacttatgcaattattttttgtaaacagtggtatgaggatgaatactctcatgtcacatgaga |
200 |
Q |
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| T |
31663529 |
catgttcagtttgtcttgaggttgatttatccctactaacttatgcaattattttttgtaaacagtggtatgaggatgaatactctcatgtcacatgaga |
31663628 |
T |
|
| Q |
201 |
a------------------tccattgtaaaactttgagatgtttaagcaattatacatcacaaacacaatgatagctttactttaccaaacacatttgtt |
282 |
Q |
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| T |
31663629 |
atccattaaaaattgtgtctccattgtaaaactttgagatgtttaagcaattatacatcacaaacacaatgatagctttactttaccaaacacatttgtt |
31663728 |
T |
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| Q |
283 |
tgaannnnnnnnaaaatatcaaacattacaaagtataaccataatttaaattgacattgtaaatttgtgcaacttcaggatttccaaattggagagacgg |
382 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31663729 |
tgaattttttttaaaatatcaaacattacaaagtataaccataatttaaattgacattgtaaatttgtgcaacttcaggatttccaaattggagaaacgg |
31663828 |
T |
|
| Q |
383 |
ttaggagcttgccccattgtcatcatatgtttcacataccgtgcattgac |
432 |
Q |
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| T |
31663829 |
ttaggagcttgccccattgtcatcatatgtttcacataccttgcattgac |
31663878 |
T |
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