View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2830_low_3 (Length: 438)
Name: NF2830_low_3
Description: NF2830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2830_low_3 |
 | |
|
| [»] scaffold0223 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0223 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 25958 - 25786
Alignment:
| Q |
14 |
tcacatattgtggtgccttaacgactatcaatttcttgctaatcgtagaacgtaactcttttgcacgaaatatgctaagattcttgttccacattacgca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25958 |
tcacatattgtggtgccttaacgactatcaatttcttgctaatcgtagaacgtaactctcttgcacgaaatatgctaagattcttgttccacattacgca |
25859 |
T |
|
| Q |
114 |
atgagtcaatattttccttttaagtattcgattcttactctcattattaacatactcgaaagccttcattttt |
186 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25858 |
atgagtcaatattttcctttaaagtattcgattcttgctctcattattaacatactcgaaagccttcactttt |
25786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 169 - 351
Target Start/End: Complemental strand, 25763 - 25579
Alignment:
| Q |
169 |
tcgaaagccttcatttttattcctcctatcttaaatataagtnnnnnnnnnn--gctcattgaataactattgtaaccggtctataatataaatcagatg |
266 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25763 |
tcgaaagccttcacttttactcctcctatcttaaatataagtaaaaagaaaaaggctcattgaataactattgtaaccggtctataatataaaccagata |
25664 |
T |
|
| Q |
267 |
catcaattatcaataatttgaaataatgctcgttgcttatatttgccttgaaggtataaattgacgtcccgcacctaaaatgact |
351 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
25663 |
catcaattatcaataatttgaaacaatgcttgttgcttatatttgtcttgaaggtataaattgatgtcccgcatctaaaatgact |
25579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 430
Target Start/End: Complemental strand, 25540 - 25502
Alignment:
| Q |
392 |
cgatccaagaatcaactttagtttatcattgattcatct |
430 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
25540 |
cgatccaagaatcgactttagtttaccattgattcatct |
25502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University