View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2830_low_4 (Length: 364)
Name: NF2830_low_4
Description: NF2830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2830_low_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 10467007 - 10467370
Alignment:
| Q |
1 |
tttcgagttaaaatattctcccatttcgatccacttaaaaatcgaatattaaactcttccagtaatactacatctataaaacaaattatccttaacctca |
100 |
Q |
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| T |
10467007 |
tttcgagttaaaatatactcccatttcgatccacttaaaaatcgagtattaaacccttccagcaatgctacatctataaaacaaattatccttaatctca |
10467106 |
T |
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| Q |
101 |
agattttccggtcaaaatacacaattcgaactaactccttccaccaacactccccttctagttatgtttccgcaagtaagaagtctaccaataataacta |
200 |
Q |
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| T |
10467107 |
agatttttcggacaaaatacacaattcgaaccaactccttccaccaacactccccttctagttatgtttccgcaaataagaagtctaccaataataacta |
10467206 |
T |
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| Q |
201 |
tcctcaatttgataaatcctaagtccaaaaaatgtcatctctaccatcacccttacnnnnnnncatcctcaatttgttaaaagatactgtaccaactcta |
300 |
Q |
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| T |
10467207 |
tcctcaatttgatgaatcctaagtccaaaaaatgtcatctctaccatcacccttacaaaaaaacatcttcaatttgttaaaagatactgtaccaactcta |
10467306 |
T |
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| Q |
301 |
cttctcattggcgtaactccactctccacctaagatcccatgcacaatttccacctttcttagc |
364 |
Q |
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| T |
10467307 |
cttctcattggcgtaactccactctccacctaagatcccatgcacaatttccacctttcttagc |
10467370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 2017191 - 2017130
Alignment:
| Q |
29 |
atccacttaaaaatcgaatattaaactcttccagtaatactacatctataaaacaaattatc |
90 |
Q |
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| T |
2017191 |
atccacttaaaaatcgaatatcaaacctttccaacaaaattacatctacaaaacaaattatc |
2017130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 67 - 191
Target Start/End: Complemental strand, 6700668 - 6700545
Alignment:
| Q |
67 |
actacatctataaaacaaattatccttaacctcaagattttccggtcaaaatacacaattcgaactaactccttccaccaacactccccttctagttatg |
166 |
Q |
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||||||| || |||| |||||||||| ||||||||||| ||| | ||||| ||||||||| |||||||||||||| ||||||||| ||||||||||| | |
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| T |
6700668 |
actacatatacaaaataaattatcctccacctcaagattgtccagacaaaacacacaattcaaactaactccttcc-ccaacactctccttctagttaag |
6700570 |
T |
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| Q |
167 |
tttccgcaagtaagaagtctaccaa |
191 |
Q |
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||| || |||| ||||||| |||| |
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| T |
6700569 |
tttatgcgagtacgaagtcttccaa |
6700545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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