View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2830_low_5 (Length: 363)
Name: NF2830_low_5
Description: NF2830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2830_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 781036 - 781183
Alignment:
| Q |
20 |
cctacaagtgaggagctcgagaaacaagaaatgatgaaaaaatttatgagtcaggtaagcc---tttgccatctattgac----gtaaacatttgtgaga |
112 |
Q |
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| T |
781036 |
cctacaagcgaggagctcgagaaacaggaaatgatgaagaaatttatgagtcaggtaagccgcatttgccatctatcgacatatataagcatttgtgaga |
781135 |
T |
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| Q |
113 |
ttgtttcggagagtttatggaaacagcttgtaacatatgtataaattg |
160 |
Q |
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| T |
781136 |
ttgttttggagagcttatggaaacagcttctaacatatgtataaattg |
781183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 246 - 349
Target Start/End: Original strand, 781270 - 781371
Alignment:
| Q |
246 |
cccttaattaatttgcttatatcttgattttatgttttgcagcatcctaacatggacttctctggtgcaaaattatgttagaaagttagaatggtgctat |
345 |
Q |
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| T |
781270 |
cccttacttaatttgcttac--cttgattttatgttttgcagcatcctaacatggacttctctggtgcaaaattatcttagaaagttagaatgatgctat |
781367 |
T |
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| Q |
346 |
cctc |
349 |
Q |
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|||| |
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| T |
781368 |
cctc |
781371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 785963 - 786027
Alignment:
| Q |
20 |
cctacaagtgaggagctcgagaaacaagaaatgatgaaaaaatttatgagtcaggtaagcctttg |
84 |
Q |
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| T |
785963 |
cctacaagtgaggagctccagaaacaggaaatcatgaagaaatttatgagtcaggtaaacctttg |
786027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 769913 - 769869
Alignment:
| Q |
272 |
attttatgttttgcagcatcctaacatggacttctctggtgcaaa |
316 |
Q |
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| T |
769913 |
attttatgttttgcagcatcctaacatggacttctcgggtgcaaa |
769869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 37734124 - 37734070
Alignment:
| Q |
87 |
atctattgacgtaaacatttgtgagattgtttcggagagtttatggaaacagctt |
141 |
Q |
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| T |
37734124 |
atctactgatgtaaacatttgtgaaattgttttggagagtttatggaaatagctt |
37734070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 19305052 - 19304998
Alignment:
| Q |
87 |
atctattgacgtaaacatttgtgagattgtttcggagagtttatggaaacagctt |
141 |
Q |
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| T |
19305052 |
atctattgacataagcatttgtgagattgtgtgggagaatttgtggaaacagctt |
19304998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 11415262 - 11415219
Alignment:
| Q |
105 |
ttgtgagattgtttcggagagtttatggaaacagcttgtaacat |
148 |
Q |
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| T |
11415262 |
ttgtgagattgttttagagagtttatggaaacagcttataacat |
11415219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 43115182 - 43115132
Alignment:
| Q |
87 |
atctattgacgtaaacatttgtgagattgtttcggagagtttatggaaaca |
137 |
Q |
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| T |
43115182 |
atctattgacataatcacttgtgagattgtttggaagagtttatggaaaca |
43115132 |
T |
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