View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2830_low_6 (Length: 357)

Name: NF2830_low_6
Description: NF2830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2830_low_6
NF2830_low_6
[»] chr4 (19 HSPs)
chr4 (40-329)||(10499279-10499569)
chr4 (225-357)||(19482612-19482748)
chr4 (236-325)||(35157998-35158089)
chr4 (225-328)||(903866-903971)
chr4 (225-323)||(2361990-2362092)
chr4 (225-323)||(23293001-23293101)
chr4 (231-323)||(27706192-27706286)
chr4 (225-329)||(36635268-36635374)
chr4 (225-277)||(4157102-4157155)
chr4 (297-357)||(19500837-19500899)
chr4 (224-259)||(20633428-20633463)
chr4 (261-357)||(40481618-40481710)
chr4 (295-329)||(11931296-11931330)
chr4 (299-329)||(13134470-13134500)
chr4 (225-259)||(46084047-46084081)
chr4 (294-323)||(6485626-6485655)
chr4 (225-329)||(15029715-15029815)
chr4 (294-327)||(40179647-40179680)
chr4 (225-253)||(46160853-46160881)
[»] chr6 (28 HSPs)
chr6 (226-357)||(16766642-16766777)
chr6 (225-325)||(7938060-7938162)
chr6 (225-355)||(9107351-9107485)
chr6 (225-323)||(8776988-8777088)
chr6 (225-323)||(426529-426629)
chr6 (225-357)||(5970087-5970217)
chr6 (261-323)||(17841604-17841667)
chr6 (229-329)||(5732519-5732621)
chr6 (240-357)||(8365498-8365619)
chr6 (224-340)||(8805570-8805688)
chr6 (225-329)||(9027122-9027228)
chr6 (225-329)||(10888983-10889089)
chr6 (227-323)||(12696277-12696368)
chr6 (265-329)||(10842517-10842582)
chr6 (246-329)||(30866153-30866238)
chr6 (245-323)||(34595098-34595178)
chr6 (294-329)||(7086810-7086845)
chr6 (294-329)||(7151427-7151462)
chr6 (300-356)||(7248379-7248437)
chr6 (297-357)||(8713998-8714060)
chr6 (261-323)||(16833289-16833352)
chr6 (266-323)||(10770689-10770747)
chr6 (269-329)||(19040341-19040402)
chr6 (225-323)||(1681702-1681802)
chr6 (261-325)||(3398600-3398664)
chr6 (297-329)||(7027260-7027292)
chr6 (266-329)||(7265602-7265666)
chr6 (289-329)||(26562699-26562739)
[»] chr2 (22 HSPs)
chr2 (299-357)||(2665869-2665927)
chr2 (225-357)||(34784961-34785097)
chr2 (225-323)||(21374714-21374809)
chr2 (227-329)||(21616708-21616812)
chr2 (225-323)||(30335361-30335461)
chr2 (261-329)||(23718007-23718076)
chr2 (261-329)||(24105679-24105748)
chr2 (261-329)||(30527604-30527673)
chr2 (265-329)||(31808062-31808127)
chr2 (300-357)||(28524447-28524506)
chr2 (261-328)||(28677890-28677958)
chr2 (294-334)||(36409631-36409671)
chr2 (261-323)||(20539689-20539752)
chr2 (261-323)||(30717545-30717608)
chr2 (299-329)||(20922937-20922967)
chr2 (225-324)||(31283992-31284093)
chr2 (294-352)||(44860335-44860395)
chr2 (294-357)||(4207872-4207936)
chr2 (269-349)||(12668410-12668493)
chr2 (266-329)||(15909641-15909705)
chr2 (292-357)||(35056881-35056948)
chr2 (294-326)||(40361766-40361798)
[»] scaffold0053 (1 HSPs)
scaffold0053 (225-323)||(8742-8842)
[»] chr1 (35 HSPs)
chr1 (225-357)||(47989442-47989577)
chr1 (225-325)||(398778-398880)
chr1 (226-325)||(1486722-1486823)
chr1 (225-323)||(42359464-42359564)
chr1 (261-356)||(17754292-17754390)
chr1 (225-323)||(22881631-22881725)
chr1 (225-329)||(38503264-38503370)
chr1 (261-323)||(46348398-46348461)
chr1 (266-323)||(1705007-1705065)
chr1 (266-323)||(31672910-31672968)
chr1 (237-325)||(34298392-34298482)
chr1 (294-357)||(44482245-44482310)
chr1 (226-321)||(9103585-9103682)
chr1 (299-357)||(12713306-12713366)
chr1 (299-357)||(12717397-12717457)
chr1 (225-323)||(41877485-41877585)
chr1 (224-290)||(10577784-10577851)
chr1 (294-329)||(16164324-16164359)
chr1 (261-323)||(18556471-18556534)
chr1 (225-323)||(29144373-29144472)
chr1 (266-320)||(30359374-30359429)
chr1 (261-323)||(48450602-48450665)
chr1 (270-323)||(113289-113343)
chr1 (294-328)||(14332652-14332686)
chr1 (261-323)||(14359537-14359599)
chr1 (266-323)||(22515902-22515960)
chr1 (225-259)||(24334776-24334810)
chr1 (294-352)||(25361901-25361961)
chr1 (295-327)||(5898277-5898309)
chr1 (225-323)||(6612186-6612286)
chr1 (297-329)||(13997901-13997933)
chr1 (294-322)||(15323178-15323206)
chr1 (224-260)||(25934571-25934607)
chr1 (266-325)||(36878447-36878507)
chr1 (266-325)||(37598818-37598877)
[»] chr8 (21 HSPs)
chr8 (224-357)||(2572035-2572172)
chr8 (266-357)||(15816108-15816202)
chr8 (224-352)||(22651919-22652051)
chr8 (225-352)||(29510288-29510419)
chr8 (261-323)||(8343297-8343360)
chr8 (299-349)||(11803279-11803331)
chr8 (265-329)||(39954288-39954353)
chr8 (225-323)||(22197757-22197857)
chr8 (225-284)||(24413615-24413675)
chr8 (294-329)||(14731727-14731762)
chr8 (261-323)||(20873050-20873113)
chr8 (224-329)||(24362211-24362318)
chr8 (268-323)||(24613509-24613564)
chr8 (261-323)||(36450769-36450832)
chr8 (240-312)||(13436990-13437064)
chr8 (225-325)||(44067460-44067562)
chr8 (294-323)||(8342987-8343016)
chr8 (225-270)||(24669384-24669429)
chr8 (226-329)||(36934615-36934720)
chr8 (225-257)||(3951612-3951644)
chr8 (266-329)||(13844605-13844669)
[»] chr7 (20 HSPs)
chr7 (227-323)||(11061091-11061189)
chr7 (266-323)||(9408349-9408407)
chr7 (294-357)||(15902837-15902902)
chr7 (236-357)||(24339597-24339722)
chr7 (225-323)||(25481846-25481946)
chr7 (266-357)||(32308106-32308200)
chr7 (294-351)||(29787356-29787413)
chr7 (225-329)||(18213042-18213149)
chr7 (267-329)||(20549778-20549841)
chr7 (294-329)||(38143238-38143273)
chr7 (225-329)||(1433398-1433504)
chr7 (266-340)||(5233615-5233692)
chr7 (224-277)||(9778451-9778505)
chr7 (261-329)||(22868023-22868092)
chr7 (298-327)||(41020515-41020544)
chr7 (272-323)||(11831424-11831476)
chr7 (297-325)||(15680827-15680855)
chr7 (299-327)||(27093424-27093452)
chr7 (299-327)||(27184849-27184877)
chr7 (247-322)||(35861931-35862007)
[»] chr5 (27 HSPs)
chr5 (225-357)||(21522694-21522830)
chr5 (225-357)||(21533260-21533396)
chr5 (261-323)||(14674250-14674313)
chr5 (267-323)||(6247609-6247666)
chr5 (225-324)||(6770487-6770588)
chr5 (238-323)||(21191071-21191158)
chr5 (240-325)||(22013373-22013460)
chr5 (227-352)||(41995417-41995544)
chr5 (236-357)||(21541985-21542110)
chr5 (267-325)||(43564870-43564927)
chr5 (224-323)||(19579644-19579745)
chr5 (261-329)||(27144444-27144513)
chr5 (240-352)||(37328828-37328944)
chr5 (230-320)||(13287417-13287509)
chr5 (225-302)||(15382421-15382500)
chr5 (269-323)||(33178014-33178069)
chr5 (266-356)||(3966489-3966582)
chr5 (266-323)||(21351920-21351978)
chr5 (266-323)||(31084309-31084367)
chr5 (225-325)||(36642775-36642876)
chr5 (266-323)||(39698527-39698585)
chr5 (266-323)||(42893346-42893404)
chr5 (299-357)||(18592093-18592153)
chr5 (225-254)||(32426938-32426967)
chr5 (294-327)||(35017052-35017085)
chr5 (294-330)||(24273038-24273074)
chr5 (294-330)||(24389140-24389176)
[»] chr3 (31 HSPs)
chr3 (225-323)||(21479068-21479162)
chr3 (225-320)||(10335304-10335401)
chr3 (225-357)||(15796273-15796409)
chr3 (246-323)||(8587036-8587115)
chr3 (267-357)||(4987270-4987363)
chr3 (225-323)||(14747511-14747606)
chr3 (226-320)||(16000034-16000130)
chr3 (294-329)||(15314885-15314920)
chr3 (294-357)||(25064924-25064987)
chr3 (224-325)||(34307793-34307896)
chr3 (261-323)||(55401056-55401119)
chr3 (266-323)||(10268501-10268559)
chr3 (225-320)||(3164043-3164140)
chr3 (243-352)||(14829652-14829764)
chr3 (294-329)||(7928465-7928500)
chr3 (267-321)||(10954939-10954994)
chr3 (294-329)||(11313809-11313844)
chr3 (294-329)||(32804549-32804584)
chr3 (225-323)||(35994753-35994852)
chr3 (294-329)||(49505163-49505198)
chr3 (225-312)||(750644-750734)
chr3 (299-346)||(2731832-2731881)
chr3 (294-323)||(1509554-1509583)
chr3 (237-324)||(23915915-23916004)
chr3 (266-357)||(2620034-2620126)
chr3 (294-326)||(4201411-4201443)
chr3 (245-323)||(28917965-28918045)
chr3 (266-329)||(29508430-29508494)
chr3 (223-259)||(32400775-32400811)
chr3 (272-323)||(34910309-34910361)
chr3 (297-329)||(40993344-40993376)
[»] scaffold0027 (1 HSPs)
scaffold0027 (225-323)||(46626-46726)
[»] scaffold0021 (1 HSPs)
scaffold0021 (225-323)||(130426-130526)
[»] scaffold1528 (1 HSPs)
scaffold1528 (261-356)||(1016-1114)
[»] scaffold0123 (1 HSPs)
scaffold0123 (289-357)||(44504-44574)
[»] scaffold0003 (1 HSPs)
scaffold0003 (245-324)||(241558-241639)
[»] scaffold0103 (1 HSPs)
scaffold0103 (261-323)||(51792-51855)
[»] scaffold0171 (2 HSPs)
scaffold0171 (225-325)||(23371-23466)
scaffold0171 (267-325)||(23497-23557)
[»] scaffold0246 (1 HSPs)
scaffold0246 (261-357)||(19557-19649)
[»] scaffold0223 (1 HSPs)
scaffold0223 (261-323)||(20153-20216)
[»] scaffold0227 (1 HSPs)
scaffold0227 (272-325)||(7324-7378)
[»] scaffold0306 (1 HSPs)
scaffold0306 (240-323)||(13359-13444)
[»] scaffold0152 (1 HSPs)
scaffold0152 (240-323)||(21883-21968)
[»] scaffold0011 (1 HSPs)
scaffold0011 (294-323)||(17764-17793)
[»] scaffold0361 (1 HSPs)
scaffold0361 (272-323)||(14522-14574)
[»] scaffold0018 (1 HSPs)
scaffold0018 (261-323)||(178833-178897)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 40 - 329
Target Start/End: Complemental strand, 10499569 - 10499279
Alignment:
Q  40 gttttttaatagaaaaataattaaatatattttttagttctctaattatccaagtaaacaattgagctcaaatgattaatgaattt-aaactcttagtta 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10499569 gttttttaatagaaaaataattaaatatattttttagttctctaattatccaagtaaacaattgagctcaaatgattaatgaattttaaactcttagtta 10499470  T
Q  139 aagacaaattgtttcgaaatatccaaattcgaattctaactaaaaaattctttggaaaaatgctcgatcaaagtttggattactcgctatgaagcatgga 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10499469 aagacaaattgtttcgaaatatccaaattcgaattctaactaaaaaaatctttggaaaaatgctcggtcaaagtttggattactcgctatgaagcatgga 10499370  T
Q  239 tacggacacggacaccagacatacactgacactgacacaccgacacatctaaaacttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    ||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10499369 tacagatacggacaccagacacacactgacactgacacaccgacacatctaaaacttgagaaaatcacataatttagtgtaattatatgtg 10499279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 357
Target Start/End: Original strand, 19482612 - 19482748
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| ||||||| |||| |||||||||||  |||| ||||||||||| |||||||| |||| || ||||||| |||||||||||  ||||||||    
T  19482612 ctatgaagcacggatacgaacacagacaccagacacgacacagacactgacacgccgacacaactaataatttgaaaatatcacataattcggtgtaatt 19482711  T
Q  323 ata--tgtgggtgttgtgtcggtgttggacacaacac 357  Q
    | |  ||| ||||| |||||||| |||||||| ||||    
T  19482712 acaagtgttggtgtcgtgtcggtattggacacgacac 19482748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 325
Target Start/End: Complemental strand, 35158089 - 35157998
Alignment:
Q  236 ggatacggacacggacaccagacata-cactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattata 325  Q
    ||||||||||||||||||| |||| | ||| ||||||||||| ||||| || |||| || ||| ||||||||||||||||||||||||||||    
T  35158089 ggatacggacacggacaccggacacaacacggacactgacacgccgacgcaactaataatttggaaaaatcacataatttagtgtaattata 35157998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 225 - 328
Target Start/End: Original strand, 903866 - 903971
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacataca-ctgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| |||||||||||||| | ||||||||| | | ||||||||||||||| |||   ||| || |||| |||||||||||||| |||||||||    
T  903866 ctatgaagcacggatacggacacgggcgccagacataaaacggacactgacacaccggcaccgttaataatttgagaaaatcacataattcagtgtaatt 903965  T
Q  323 atatgt 328  Q
    ||||||    
T  903966 atatgt 903971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 2362092 - 2361990
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacatac---actgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaa 320  Q
    |||||||| | ||||||||||||| ||| |||||| ||   | ||||| ||||||||||||||| |||| || |||||||||| ||||||||||||||||    
T  2362092 ctatgaagtacggatacggacacgaacatcagacacacgacattgacattgacacaccgacacagctaataatttgaaaaaattacataatttagtgtaa 2361993  T
Q  321 tta 323  Q
    |||    
T  2361992 tta 2361990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 23293101 - 23293001
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    ||||||||||  |||||||||||||||||| ||||  |||| |||| |||||| |||||||| |||| || ||||||||||||||||||| ||| |||||    
T  23293101 ctatgaagcacagatacggacacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtataatt 23293002  T
Q  323 a 323  Q
    |    
T  23293001 a 23293001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 27706286 - 27706192
Alignment:
Q  231 agcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||| ||||||||||||||||||||||||  |||  |||||||||||  |||||||  ||| || || |||||||||||||||||||||||||||    
T  27706286 agcacggatacggacacggacaccagacacgacagggacactgacacgtcgacacaattaataatttaaaaaaatcacataatttagtgtaatta 27706192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 329
Target Start/End: Original strand, 36635268 - 36635374
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||||||||| |||||| |||||| ||||  || | ||||||||||| || ||||  |||| || |||| |||||||||||||| |||||||||    
T  36635268 ctatgaagcatggataaggacacagacaccggacacgactcggacactgacacgccaacaccactaataatttgagaaaatcacataattcagtgtaatt 36635367  T
Q  323 atatgtg 329  Q
    |||||||    
T  36635368 atatgtg 36635374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 4157102 - 4157155
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacaca 277  Q
    |||||||||| ||||||||||||||||||||||||  |||| ||||||||||||    
T  4157102 ctatgaagcacggatacggacacggacaccagacacgacacagacactgacaca 4157155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 19500899 - 19500837
Alignment:
Q  297 aaaaaatcacataatttagtgtaattatatgtg--ggtgttgtgtcggtgttggacacaacac 357  Q
    |||||| |||||| |||||||||||||||||||  ||||| |||||||||| |||||| ||||    
T  19500899 aaaaaaacacatattttagtgtaattatatgtgatggtgtcgtgtcggtgtcggacacgacac 19500837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 259
Target Start/End: Original strand, 20633428 - 20633463
Alignment:
Q  224 gctatgaagcatggatacggacacggacaccagaca 259  Q
    ||||||||||| ||||||||||||||||||||||||    
T  20633428 gctatgaagcacggatacggacacggacaccagaca 20633463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 357
Target Start/End: Original strand, 40481618 - 40481710
Alignment:
Q  261 acactgacactgacacaccgacacatctaaaacttgaaaaaatcacataatttagtgtaattatatgtgggtgttgtgtcggtgttggacacaacac 357  Q
    |||||||||||||||| |||| ||| |||| | ||  ||||||||||||||| |||||||||| |     ||||| |||||||||||||||| ||||    
T  40481618 acactgacactgacacgccgatacaactaataatttgaaaaatcacataattcagtgtaattaca----agtgttatgtcggtgttggacacgacac 40481710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 329
Target Start/End: Original strand, 11931296 - 11931330
Alignment:
Q  295 tgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    |||||||||||||||||||||||||| ||||||||    
T  11931296 tgaaaaaatcacataatttagtgtaaatatatgtg 11931330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 329
Target Start/End: Original strand, 13134470 - 13134500
Alignment:
Q  299 aaaatcacataatttagtgtaattatatgtg 329  Q
    |||||||||||||||||||||||||||||||    
T  13134470 aaaatcacataatttagtgtaattatatgtg 13134500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 259
Target Start/End: Complemental strand, 46084081 - 46084047
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca 259  Q
    |||||||||||||||||||||||||||||| ||||    
T  46084081 ctatgaagcatggatacggacacggacaccggaca 46084047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Complemental strand, 6485655 - 6485626
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||||||||||||||||||||||||||||    
T  6485655 ttgaaaaaatcacataatttagtgtaatta 6485626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 329
Target Start/End: Original strand, 15029715 - 15029815
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacatacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||||||||| ||||||||||| ||| ||| ||||      ||||||||||| | |||||  |||| || ||||||| ||||||||||| ||||||||||    
T  15029715 ctatgaagcagggatacggacatggagaccggacac-----gacactgacacgcagacactgctaataatttgaaaatatcacataattcagtgtaatta 15029809  T
Q  324 tatgtg 329  Q
    ||||||    
T  15029810 tatgtg 15029815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 327
Target Start/End: Complemental strand, 40179680 - 40179647
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatg 327  Q
    ||||||||||||||||||| ||||||||||||||    
T  40179680 ttgaaaaaatcacataattcagtgtaattatatg 40179647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 253
Target Start/End: Original strand, 46160853 - 46160881
Alignment:
Q  225 ctatgaagcatggatacggacacggacac 253  Q
    |||||||||||||||||||||||||||||    
T  46160853 ctatgaagcatggatacggacacggacac 46160881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 226 - 357
Target Start/End: Original strand, 16766642 - 16766777
Alignment:
Q  226 tatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||||||||||||||||||||||||||| ||||  |||  ||||||||||| |||||||| |||| || ||||||||||||||||||| ||||||||||    
T  16766642 tatgaagcatggatacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 16766741  T
Q  324 ta--tgtgggtgttgtgtcggtgttggacacaacac 357  Q
     |  ||| ||||| |||||||||| |||||||||||    
T  16766742 caagtgtcggtgtcgtgtcggtgtcggacacaacac 16766777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 325
Target Start/End: Original strand, 7938060 - 7938162
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| ||||||||||||||||||| ||||  |||  ||||||||||| |||||||| |||| || |||||||||||| ||||||||||||||||    
T  7938060 ctatgaagcacggatacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaatt 7938159  T
Q  323 ata 325  Q
    |||    
T  7938160 ata 7938162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 355
Target Start/End: Complemental strand, 9107485 - 9107351
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| |||||| |||||||||||| ||||  |||| |||||| |||| |||||||| |||| || |||||||||||||| |||| |||||||||    
T  9107485 ctatgaagcacggatactgacacggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcacaaaattcagtgtaatt 9107386  T
Q  323 ata--tgtgggtgttgtgtcggtgttggacacaac 355  Q
    | |  ||| ||||| |||||||||| |||||||||    
T  9107385 acaagtgtcggtgtcgtgtcggtgtcggacacaac 9107351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 8777088 - 8776988
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| ||||||||||||||||| | ||||  |||| ||||||||||| |||||||| |||| || |||||||||||||| |||| |||||||||    
T  8777088 ctatgaagcacggatacggacacggacaacggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatcacaaaattcagtgtaatt 8776989  T
Q  323 a 323  Q
    |    
T  8776988 a 8776988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 426629 - 426529
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    ||||||||||||||||| |||||||| ||| ||||  |||| ||||||||||| ||||||||  ||| || ||||||||||||||||||| | |||||||    
T  426629 ctatgaagcatggatacagacacggataccggacacgacacggacactgacacgccgacacagttaataatttgaaaaaatcacataattaaatgtaatt 426530  T
Q  323 a 323  Q
    |    
T  426529 a 426529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 357
Target Start/End: Complemental strand, 5970217 - 5970087
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacatacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt- 322  Q
    ||||||||||  |||||||||||||||||| |||||     ||||| |||||  |||||||  ||| || ||||||||||||||||||| |||||||||     
T  5970217 ctatgaagcacagatacggacacggacaccggacat-----gacacggacacgtcgacacagttaataatttgaaaaaatcacataattcagtgtaatta 5970123  T
Q  323 -atatgtgggtgttgtgtcggtgttggacacaacac 357  Q
     | |||||||||| |||||||||| |||||| ||||    
T  5970122 caaatgtgggtgtcgtgtcggtgtcggacacgacac 5970087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 17841667 - 17841604
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||| ||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||||    
T  17841667 acacggacactgacacgccgacacagctaataatttgaaaaaatcacataatttagtgtaatta 17841604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 329
Target Start/End: Complemental strand, 5732621 - 5732519
Alignment:
Q  229 gaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattatat 326  Q
    ||||||||||||| |||||||||||  ||||  |||  ||||||||||| |||||||   ||| || |||| ||||||||||| ||||||||||||||||    
T  5732621 gaagcatggatacagacacggacactggacacgacatggacactgacacgccgacaccgttaataatttgagaaaatcacatattttagtgtaattatat 5732522  T
Q  327 gtg 329  Q
    |||    
T  5732521 gtg 5732519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 357
Target Start/End: Complemental strand, 8365619 - 8365498
Alignment:
Q  240 acggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattata--tgtgggtgtt 335  Q
    ||||| ||||||||||||||  |||| ||||||||||| |||||||| |||| || ||||||| |||||||||||  ||||||||| |  ||| |||||     
T  8365619 acggatacggacaccagacacgacacggacactgacacgccgacacaactaataatttgaaaatatcacataattcggtgtaattacaagtgtcggtgtc 8365520  T
Q  336 gtgtcggtgttggacacaacac 357  Q
    |||||||| | |||||| ||||    
T  8365519 gtgtcggtatcggacacgacac 8365498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 340
Target Start/End: Complemental strand, 8805688 - 8805570
Alignment:
Q  224 gctatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaat 321  Q
    ||||||||||||||||||  ||||  ||||||||||  |||| ||||| |||||  || |||  |||| || |||| |||||||||||||||||||||||    
T  8805688 gctatgaagcatggatacatacacaaacaccagacacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataatttagtgtaat 8805589  T
Q  322 tatatgtgggtgttgtgtc 340  Q
    ||| ||| ||||| |||||    
T  8805588 tatgtgtcggtgtagtgtc 8805570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 329
Target Start/End: Original strand, 9027122 - 9027228
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    ||||||||||  ||||||||||||||| || ||||  |||| ||||||||||| |||||||  |||| || |||| | ||||||||||||  ||||||||    
T  9027122 ctatgaagcaccgatacggacacggactccggacacgacacggacactgacacgccgacaccgctaataatttgagataatcacataattccgtgtaatt 9027221  T
Q  323 atatgtg 329  Q
    |||||||    
T  9027222 atatgtg 9027228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 329
Target Start/End: Complemental strand, 10889089 - 10888983
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| |||| | |||||||||| || |||| |||| ||||| ||||||  |||||  |||| || |||| |||||||||||||||||||| |||    
T  10889089 ctatgaagcacggatgcagacacggacatcaaacatgacacggacaccgacacatagacaccgctaataatttgataaaatcacataatttagtgtgatt 10888990  T
Q  323 atatgtg 329  Q
    |||||||    
T  10888989 atatgtg 10888983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 323
Target Start/End: Original strand, 12696277 - 12696368
Alignment:
Q  227 atgaagcatggatacggacacggacaccagacatacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||||||| |||||||||||||||||| |      ||| ||||||||||| |||||||| |||| || |||||||||| |||||||| ||||||||||    
T  12696277 atgaagcacggatacggacacggacacga------cacggacactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaatta 12696368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 10842517 - 10842582
Alignment:
Q  265 tgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    |||||| ||||| |||||||  |||| || |||||||||||||||||||||||||||| |||||||    
T  10842517 tgacacggacacgccgacaccgctaataatttgaaaaaatcacataatttagtgtaatcatatgtg 10842582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 329
Target Start/End: Complemental strand, 30866238 - 30866153
Alignment:
Q  246 acggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    ||||||||| ||||| |||||||||| |||||||| ||||  |||| || |||| |||||||||||||| | ||||||||||||||    
T  30866238 acggacaccggacatgacactgacaccgacacaccaacaccgctaataatttgagaaaatcacataattcaatgtaattatatgtg 30866153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 34595098 - 34595178
Alignment:
Q  245 cacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||||||||| ||||  |||| |||| |||||| |||||||| |||| || ||||||||||||||||||| ||||||||||    
T  34595098 cacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaatta 34595178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 7086810 - 7086845
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    |||| |||||||||||||||||||||||||||||||    
T  7086810 ttgagaaaatcacataatttagtgtaattatatgtg 7086845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 7151427 - 7151462
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    ||||||||||||||||||| ||||||||||||||||    
T  7151427 ttgaaaaaatcacataattaagtgtaattatatgtg 7151462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 7248379 - 7248437
Alignment:
Q  300 aaatcacataatttagtgtaattatatgtg--ggtgttgtgtcggtgttggacacaaca 356  Q
    ||||||||||||| || |||||||||||||  || || |||||||||||||||||||||    
T  7248379 aaatcacataattcagggtaattatatgtgttggagtcgtgtcggtgttggacacaaca 7248437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 8713998 - 8714060
Alignment:
Q  297 aaaaaatcacataatttagtgtaatt--atatgtgggtgttgtgtcggtgttggacacaacac 357  Q
    |||||||||||||||| |||||||||  | |||||||||| |||||||||| |||||| ||||    
T  8713998 aaaaaatcacataattcagtgtaattacaaatgtgggtgtcgtgtcggtgtcggacacgacac 8714060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 16833289 - 16833352
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||| ||||||||||| |||||||| |||| || |||||||||||||||| || ||||||||||    
T  16833289 acacagacactgacacgccgacacaactaataatttgaaaaaatcacatacttcagtgtaatta 16833352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 10770747 - 10770689
Alignment:
Q  266 gacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||||||||| || ||||| |||| || ||||||||||||||||||| ||||||||||    
T  10770747 gacactgacacgccaacacaactaataatttgaaaaaatcacataattcagtgtaatta 10770689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 19040341 - 19040402
Alignment:
Q  269 actgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    |||||||| |||||||  |||| || |||| |||||||||||||| ||||||||||||||||    
T  19040341 actgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtg 19040402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 323
Target Start/End: Original strand, 1681702 - 1681802
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| |||||| ||||| ||||||  |||  ||||  ||||| |||| |||||||| |||| || ||||||||||||| ||||| |||||||||    
T  1681702 ctatgaagcacggatacagacacagacaccgaacacgacacatacactaacacgccgacacaactaataatttgaaaaaatcacgtaattcagtgtaatt 1681801  T
Q  323 a 323  Q
    |    
T  1681802 a 1681802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 3398600 - 3398664
Alignment:
Q  261 acactgacactgacacaccgacacatctaaaacttgaaaaaatcacataatttagtgtaattata 325  Q
    |||| ||||||||||| |||||||| |||| | ||  |||||||| |||||| ||||||||||||    
T  3398600 acacggacactgacacgccgacacagctaataatttgaaaaatcatataattcagtgtaattata 3398664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 7027260 - 7027292
Alignment:
Q  297 aaaaaatcacataatttagtgtaattatatgtg 329  Q
    |||||||||||||||| ||||||||||||||||    
T  7027260 aaaaaatcacataattcagtgtaattatatgtg 7027292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 329
Target Start/End: Complemental strand, 7265666 - 7265602
Alignment:
Q  266 gacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    ||||||||||| || ||||  |||| || |||| |||||||||||||| ||||||||||||||||    
T  7265666 gacactgacacgccaacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtg 7265602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 329
Target Start/End: Original strand, 26562699 - 26562739
Alignment:
Q  289 aaaacttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    |||| |||| |||||||||||||| ||||||||||||||||    
T  26562699 aaaatttgagaaaatcacataattcagtgtaattatatgtg 26562739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 2665927 - 2665869
Alignment:
Q  299 aaaatcacataatttagtgtaattatatgtgggtgttgtgtcggtgttggacacaacac 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2665927 aaaatcacataatttagtgtaattatatgtgggtgttgtgtcggtgttgaacacaacac 2665869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 225 - 357
Target Start/End: Complemental strand, 34785097 - 34784961
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    ||||||||||  ||||||||||||||| |||||||  |||| |||||||||||||||||||| ||||    || | ||||||||||||||||||||||||    
T  34785097 ctatgaagcacagatacggacacggaccccagacacgacacggacactgacacaccgacacaactaatttttttagaaaatcacataatttagtgtaatt 34784998  T
Q  323 atatgtg--ggtgttgtgtcggtgttggacacaacac 357  Q
    |||||||  ||||| |||||||| | |||||| ||||    
T  34784997 atatgtgtcggtgtcgtgtcggtatcggacacgacac 34784961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 21374809 - 21374714
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacatacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||||||||| ||||||||||||||||||| |    |||| |||||| |||| |||||||| |||| || |||||||||| |||||||| ||||||||||    
T  21374809 ctatgaagcacggatacggacacggacaccgg----acacggacactaacacgccgacacagctaataatttgaaaaaattacataattcagtgtaatta 21374714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 329
Target Start/End: Original strand, 21616708 - 21616812
Alignment:
Q  227 atgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattat 324  Q
    |||||||| |||||||||||| |||||  ||||  |||| ||||| ||||| |||||||  |||| || |||| |||||||||||||| |||||||||||    
T  21616708 atgaagcacggatacggacacagacacatgacacgacacggacacggacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattat 21616807  T
Q  325 atgtg 329  Q
    |||||    
T  21616808 atgtg 21616812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 323
Target Start/End: Original strand, 30335361 - 30335461
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| |||||||||||||||   ||||||  |||| ||||||  ||| |||||||| |||| || |||||||||| ||||||||||||||||||    
T  30335361 ctatgaagcacggatacggacacggatctcagacacgacacggacactagcacgccgacacaactaataatttgaaaaaatgacataatttagtgtaatt 30335460  T
Q  323 a 323  Q
    |    
T  30335461 a 30335461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 329
Target Start/End: Original strand, 23718007 - 23718076
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    |||| |||||||||||||||||||  |||| || |||| ||| |||||||||| ||||||||||||||||    
T  23718007 acacggacactgacacaccgacaccgctaataatttgagaaagtcacataattcagtgtaattatatgtg 23718076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 329
Target Start/End: Original strand, 24105679 - 24105748
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    |||| |||||||||||||||||||  |||| || |||| ||| |||||||||| ||||||||||||||||    
T  24105679 acacggacactgacacaccgacaccgctaataatttgagaaagtcacataattcagtgtaattatatgtg 24105748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 329
Target Start/End: Complemental strand, 30527673 - 30527604
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    ||||||||||||||||||| ||||   ||| || |||| ||||||| |||||||||||||||||||||||    
T  30527673 acactgacactgacacacccacactgttaataatttgagaaaatcatataatttagtgtaattatatgtg 30527604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 31808062 - 31808127
Alignment:
Q  265 tgacactgacacaccgacacatctaaaacttgaa-aaaatcacataatttagtgtaattatatgtg 329  Q
    ||||||||||||||||||||  |||| | || || |||||||||||||| ||||||||||||||||    
T  31808062 tgacactgacacaccgacaccgctaataatttaacaaaatcacataattcagtgtaattatatgtg 31808127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 28524447 - 28524506
Alignment:
Q  300 aaatcacataatttagtgtaattatatgtg--ggtgttgtgtcggtgttggacacaacac 357  Q
    ||||||||||||| ||||||||||||||||  | |||||||| ||||| |||||||||||    
T  28524447 aaatcacataattcagtgtaattatatgtgtcgttgttgtgttggtgtcggacacaacac 28524506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 328
Target Start/End: Original strand, 28677890 - 28677958
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattatatgt 328  Q
    ||||||||||||  || |||||||  |||| || ||||||||||||||||||| |||||||||||||||    
T  28677890 acactgacactggaacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaattatatgt 28677958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 36409671 - 36409631
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatgtgggtgt 334  Q
    ||||||||||||||||||||||||||||||| ||| |||||    
T  36409671 ttgaaaaaatcacataatttagtgtaattatgtgtcggtgt 36409631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 20539752 - 20539689
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||| |||||||||||  ||||||| |||| || |||||||||||| |||||||||||||||||    
T  20539752 acacggacactgacacgtcgacacagctaataatttgaaaaaatcatataatttagtgtaatta 20539689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 30717608 - 30717545
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||| |||||||||| ||||||| | |||| || ||||||||||||||||||| ||||||||||    
T  30717608 acacggacactgacaaaccgacaaagctaataatttgaaaaaatcacataattcagtgtaatta 30717545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 329
Target Start/End: Complemental strand, 20922967 - 20922937
Alignment:
Q  299 aaaatcacataatttagtgtaattatatgtg 329  Q
    |||||||||||||||||||||||||||||||    
T  20922967 aaaatcacataatttagtgtaattatatgtg 20922937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 324
Target Start/End: Original strand, 31283992 - 31284093
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    ||||||||||  |||||||||||||||||| ||||| ||||  ||||| |||| |||||||  |||| || |||| |||||||||||||  | |||||||    
T  31283992 ctatgaagcacagatacggacacggacaccggacataacacgtacacttacacgccgacactgctaataatttgagaaaatcacataatccattgtaatt 31284091  T
Q  323 at 324  Q
    ||    
T  31284092 at 31284093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 352
Target Start/End: Original strand, 44860335 - 44860395
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatgtg--ggtgttgtgtcggtgttggacac 352  Q
    |||| |||||| ||||||| ||||||||||||||||  ||||| |||| ||||||||||||    
T  44860335 ttgagaaaatcgcataattcagtgtaattatatgtgtcggtgtcgtgttggtgttggacac 44860395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 4207872 - 4207936
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattata-tgtgggtgttgtgtcggtgttggacacaacac 357  Q
    ||||||||| | |||||||||||||||||||| ||| ||| | |||||||||| |||||| ||||    
T  4207872 ttgaaaaaagcgcataatttagtgtaattatattgtcggtatcgtgtcggtgtcggacacgacac 4207936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 349
Target Start/End: Complemental strand, 12668493 - 12668410
Alignment:
Q  269 actgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattata--tgtgggtgttgtgtcggtgttgga 349  Q
    |||||||| |||||| | |||| || |||||||||| |||||||| ||||||||||||  ||| ||||| |||||||| |||||    
T  12668493 actgacacgccgacataactaataatttgaaaaaatgacataattcagtgtaattataagtgtcggtgtcgtgtcggtattgga 12668410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 329
Target Start/End: Complemental strand, 15909705 - 15909641
Alignment:
Q  266 gacactgacacaccgacacatctaaaactt-gaaaaaatcacataatttagtgtaattatatgtg 329  Q
    ||||||||||| |||| ||| |||||| || || ||||| |||||||| ||||||||||||||||    
T  15909705 gacactgacacgccgatacagctaaaattttgagaaaattacataattcagtgtaattatatgtg 15909641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 35056881 - 35056948
Alignment:
Q  292 acttgaaaaaatcacataatttagtgtaattatatgtg--ggtgttgtgtcggtgttggacacaacac 357  Q
    |||||| |||| || |||||| ||||||||||||||||  ||||| |||||||||| |||||| ||||    
T  35056881 acttgagaaaaccatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacac 35056948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 40361798 - 40361766
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatat 326  Q
    |||||||||| ||||||||||||||||||||||    
T  40361798 ttgaaaaaattacataatttagtgtaattatat 40361766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 225 - 323
Target Start/End: Original strand, 8742 - 8842
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||||||||||||||||||||||| ||||  |||| ||||||||||| |||||||| |||| || |||||||||||| || |||||||||||||    
T  8742 ctatgaagcatggatacggacacggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcatattatttagtgtaatt 8841  T
Q  323 a 323  Q
    |    
T  8842 a 8842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 225 - 357
Target Start/End: Original strand, 47989442 - 47989577
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaaaacttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||||||||||||||| |||||||| ||||||||  |||| ||||||||||| ||||||||   | || || |||||||||||||||| ||||||||||    
T  47989442 ctatgaagcatggatacagacacggataccagacacgacacagacactgacacgccgacacaataataatttaaaaaaatcacataattcagtgtaatta 47989541  T
Q  324 ta--tgtgggtgttgtgtcggtgttggacacaacac 357  Q
     |  ||| ||||| |||||||||| |||||| ||||    
T  47989542 caagtgtcggtgtcgtgtcggtgtcggacacgacac 47989577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 225 - 325
Target Start/End: Complemental strand, 398880 - 398778
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| |||||||||| |||||||| ||||  |||| ||||||||||| |||||||  |||| || ||||||||||||||||||| |||||||||    
T  398880 ctatgaagcacggatacggacgcggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaatt 398781  T
Q  323 ata 325  Q
    |||    
T  398780 ata 398778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 226 - 325
Target Start/End: Complemental strand, 1486823 - 1486722
Alignment:
Q  226 tatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||||||||||||||||||||||| ||| || |  |||| || |||||||| | |||||| |||| || ||||||||||||||||||| ||||||||||    
T  1486823 tatgaagcatggatacggacacggataccggatacgacacggatactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaatta 1486724  T
Q  324 ta 325  Q
    ||    
T  1486723 ta 1486722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 42359564 - 42359464
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacata-cactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| ||||||||||||| |||||  ||| | ||| ||||||||||| | ||||||||||| || |||||||||||||| |||| |||||||||    
T  42359564 ctatgaagcacggatacggacacgaacaccgtacacaacacggacactgacacgctgacacatctaataatttgaaaaaatcacaaaattcagtgtaatt 42359465  T
Q  323 a 323  Q
    |    
T  42359464 a 42359464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 356
Target Start/End: Original strand, 17754292 - 17754390
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattatatgtgg--gtgttgtgtcggtgttggacacaaca 356  Q
    |||| ||| |||||||||||||||  |||| || |||||||||| |||||||| ||||||| ||||||||   |||| |||||||||||||||||||||    
T  17754292 acacagacgctgacacaccgacaccgctaataatttgaaaaaattacataattcagtgtaactatatgtgtcagtgtggtgtcggtgttggacacaaca 17754390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 22881725 - 22881631
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacatacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||||||||| |||||  |||||||||||| ||||      ||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||||    
T  22881725 ctatgaagcacggatatagacacggacaccggacac-----gacactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaatta 22881631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 329
Target Start/End: Original strand, 38503264 - 38503370
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||| ||| ||||||||||||||||||  ||||| |||| |||||| ||||||||||||  |||| || |||| ||||||| ||| || |||||||||    
T  38503264 ctatgatgcacggatacggacacggacacgggacatgacacggacactaacacaccgacaccgctaataatttgagaaaatcatatatttcagtgtaatt 38503363  T
Q  323 atatgtg 329  Q
    |||||||    
T  38503364 atatgtg 38503370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 46348461 - 46348398
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||| ||||||||||| |||||||| |||| || |||||||||||| |||||||||||||||||    
T  46348461 acacggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaatta 46348398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 1705065 - 1705007
Alignment:
Q  266 gacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||| ||||||||||||||||||| || ||||||||||||||||||| || |||||||    
T  1705065 gacaccgacacaccgacacatctaataatttgaaaaaatcacataattcagggtaatta 1705007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 31672968 - 31672910
Alignment:
Q  266 gacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||||||||||||||||||| |||| || ||||||||||||| ||||| ||||||||||    
T  31672968 gacactgacacaccgacacagctaataatttgaaaaaatcacttaattcagtgtaatta 31672910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 325
Target Start/End: Original strand, 34298392 - 34298482
Alignment:
Q  237 gatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattata 325  Q
    ||||| |||||| ||||||||||  |||| || ||||||||||||||||  |||| || |||| |||||||||||||| ||||||||||||    
T  34298392 gatacagacacgtacaccagacacgacacggaaactgacacaccgacaccactaataatttgagaaaatcacataattcagtgtaattata 34298482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 44482245 - 44482310
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatgtg--ggtgttgtgtcggtgttggacacaacac 357  Q
    |||| |||||||||||||| ||||||||||||||||  ||||| |||||||||| |||||| ||||    
T  44482245 ttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacac 44482310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 321
Target Start/End: Original strand, 9103585 - 9103682
Alignment:
Q  226 tatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaat 321  Q
    ||||||||| ||||| ||||||| ||||| ||||  || | ||||||||||| ||||||||  ||| || ||||||||||||||||||||||| ||||    
T  9103585 tatgaagcacggatatggacacgaacacctgacaggactcggacactgacacgccgacacagttaataatttgaaaaaatcacataatttagtttaat 9103682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 12713366 - 12713306
Alignment:
Q  299 aaaatcacataatttagtgtaattatatg--tgggtgttgtgtcggtgttggacacaacac 357  Q
    |||||||||||||||||||||||||||||  | |||||| ||||||||| | |||||||||    
T  12713366 aaaatcacataatttagtgtaattatatgtattggtgttatgtcggtgtcgtacacaacac 12713306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 12717457 - 12717397
Alignment:
Q  299 aaaatcacataatttagtgtaattatatg--tgggtgttgtgtcggtgttggacacaacac 357  Q
    |||||||||||||||||||||||||||||  | |||||| ||||||||| | |||||||||    
T  12717457 aaaatcacataatttagtgtaattatatgtattggtgttatgtcggtgtcgtacacaacac 12717397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 41877585 - 41877485
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| ||||||||||| ||| ||||||||  |||| |||||||  || |||||||  |||| || |||| ||||| ||||||||||||||||||    
T  41877585 ctatgaagcacggatacggacatggataccagacacgacacagacactggtacgccgacaccgctaataatttgagaaaattacataatttagtgtaatt 41877486  T
Q  323 a 323  Q
    |    
T  41877485 a 41877485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 10577851 - 10577784
Alignment:
Q  224 gctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa 290  Q
    ||||||||||| ||||||||||||||||||| ||||  |||| ||||| ||||| |||||||| ||||    
T  10577851 gctatgaagcacggatacggacacggacaccggacacgacacggacaccgacacgccgacacagctaa 10577784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 329
Target Start/End: Complemental strand, 16164359 - 16164324
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    ||||||||||||||||||||| ||||||||||||||    
T  16164359 ttgaaaaaatcacataatttaatgtaattatatgtg 16164324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 18556534 - 18556471
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||| ||||||||||| |||||||| |||| || ||||||| ||||||||||||| ||||||||    
T  18556534 acacggacactgacacgccgacacagctaataatttgaaaatatcacataatttaatgtaatta 18556471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 29144472 - 29144373
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacatacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||||||||||||||||||||| || || | ||  ||||||||||||| || |||||||| |||| || |||||||||  | |||||  ||||||||||    
T  29144472 ctatgaagcatggatacggacacagatacgacacggacactgacactgatacgccgacacagctaataatttgaaaaaaatagataatgcagtgtaatta 29144373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 320
Target Start/End: Original strand, 30359374 - 30359429
Alignment:
Q  266 gacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaa 320  Q
    ||||||||||||||| |||| || | || |||||||||||||||||||||||||||    
T  30359374 gacactgacacaccggcacaactgataatttgaaaaaatcacataatttagtgtaa 30359429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 48450665 - 48450602
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||| ||||||||||| || ||||| |||| || |||||||||| |||||||||||||||||||    
T  48450665 acacggacactgacacgccaacacagctaataatttgaaaaaataacataatttagtgtaatta 48450602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 113289 - 113343
Alignment:
Q  270 ctgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||||| |||||||| |||| || ||||||||||||||||||| ||||||||||    
T  113289 ctgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 113343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 328
Target Start/End: Complemental strand, 14332686 - 14332652
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatgt 328  Q
    |||| ||||||||||||||||||||||||||||||    
T  14332686 ttgagaaaatcacataatttagtgtaattatatgt 14332652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 14359599 - 14359537
Alignment:
Q  261 acactgacactgacacaccgacacatctaaaacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||| ||||| ||||| |||||||| |||| | ||  ||||||||||||||||||||||||||    
T  14359599 acacagacacggacacgccgacacagctaataatttgaaaaatcacataatttagtgtaatta 14359537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 22515960 - 22515902
Alignment:
Q  266 gacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||| ||||| | |||||| |||| || ||||||||||||||||||||||||||||||    
T  22515960 gacacggacacgcagacacagctaataatttgaaaaaatcacataatttagtgtaatta 22515902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 259
Target Start/End: Complemental strand, 24334810 - 24334776
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca 259  Q
    |||||||||||||||||||||||||||||| ||||    
T  24334810 ctatgaagcatggatacggacacggacaccggaca 24334776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 352
Target Start/End: Original strand, 25361901 - 25361961
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatgtg--ggtgttgtgtcggtgttggacac 352  Q
    |||| |||||||||||||| ||||||||||||||||   |||| |||||||||| ||||||    
T  25361901 ttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtcggacac 25361961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 327
Target Start/End: Complemental strand, 5898309 - 5898277
Alignment:
Q  295 tgaaaaaatcacataatttagtgtaattatatg 327  Q
    |||||||||||||||||| ||||||||||||||    
T  5898309 tgaaaaaatcacataattcagtgtaattatatg 5898277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 6612286 - 6612186
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    ||||||||||  |||||||||||| ||||| ||||  |||| |||| |||||| |||| |||  ||| || |||||||||| |||||||| |||||||||    
T  6612286 ctatgaagcacagatacggacacgaacaccggacacgacacggacaatgacacgccgatacagttaataatttgaaaaaattacataattcagtgtaatt 6612187  T
Q  323 a 323  Q
    |    
T  6612186 a 6612186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 13997901 - 13997933
Alignment:
Q  297 aaaaaatcacataatttagtgtaattatatgtg 329  Q
    |||||||||||||||| ||||||||||||||||    
T  13997901 aaaaaatcacataattcagtgtaattatatgtg 13997933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 322
Target Start/End: Original strand, 15323178 - 15323206
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||||||||||||||||||||||    
T  15323178 ttgaaaaaatcacataatttagtgtaatt 15323206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 25934571 - 25934607
Alignment:
Q  224 gctatgaagcatggatacggacacggacaccagacat 260  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  25934571 gctatgaagcacggatacggacacggacaccggacat 25934607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 36878447 - 36878507
Alignment:
Q  266 gacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattata 325  Q
    ||||||||||| |||||||  |||| || |||| |||||||||||||| ||||||||||||    
T  36878447 gacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattata 36878507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 37598818 - 37598877
Alignment:
Q  266 gacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattata 325  Q
    ||||||||||| |||||||| |||| || |||||||||||||| |||| ||||||||||||    
T  37598818 gacactgacacgccgacacaactaataatttgaaaaaatcaca-aattcagtgtaattata 37598877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 224 - 357
Target Start/End: Complemental strand, 2572172 - 2572035
Alignment:
Q  224 gctatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaat 321  Q
    ||||||||||||||||||||||||||||||  ||||  |||| || || |||||  ||||||| |||| || ||||||||||||||||||||||||||||    
T  2572172 gctatgaagcatggatacggacacggacactggacacgacacggataccgacacgtcgacacacctaataatttgaaaaaatcacataatttagtgtaat 2572073  T
Q  322 tata--tgtgggtgttgtgtcggtgttggacacaacac 357  Q
    || |  ||| ||||| ||||| |||| |||||| ||||    
T  2572072 tacaagtgtcggtgtcgtgtctgtgtcggacacgacac 2572035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 15816202 - 15816108
Alignment:
Q  266 gacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattata--tgtgggtgttgtgtcggtgttggacacaacac 357  Q
    ||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||||||  ||| ||||| |||| ||||| |||||| ||||    
T  15816202 gacactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattataagtgtcggtgtcgtgttggtgtcggacacgacac 15816108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 224 - 352
Target Start/End: Original strand, 22651919 - 22652051
Alignment:
Q  224 gctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaat 321  Q
    ||||||||| | |||||||||||| |||||| ||||  |||| ||||||||||| |||||||| |||| || ||||||||||||||||||| | | ||||    
T  22651919 gctatgaagtacggatacggacactgacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcaatataat 22652018  T
Q  322 tata--tgtgggtgttgtgtcggtgttggacac 352  Q
    || |  ||| ||||| |||||||||| ||||||    
T  22652019 tacaagtgtcggtgtcgtgtcggtgtcggacac 22652051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 352
Target Start/End: Complemental strand, 29510419 - 29510288
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| |||||| |||| ||||||| ||||  |||| ||||||||||| |||||||| |||| || |||||||||||||| |||| ||| |||||    
T  29510419 ctatgaagcacggatactgacatggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacaaaattcagtataatt 29510320  T
Q  323 ata--tgtgggtgttgtgtcggtgttggacac 352  Q
    | |  ||| ||||| |||||||||| ||||||    
T  29510319 acaagtgtcggtgtagtgtcggtgtcggacac 29510288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 8343297 - 8343360
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||||||||| |||||||||||| | |||| || ||||||||||||||||||||||||||||||    
T  8343297 acactgacaccgacacaccgacatagctaataatttgaaaaaatcacataatttagtgtaatta 8343360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 11803279 - 11803331
Alignment:
Q  299 aaaatcacataatttagtgtaattatatgtg--ggtgttgtgtcggtgttgga 349  Q
    |||||||||||||| ||||||||||||||||  |||||||||| |||||||||    
T  11803279 aaaatcacataattcagtgtaattatatgtgttggtgttgtgttggtgttgga 11803331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 329
Target Start/End: Complemental strand, 39954353 - 39954288
Alignment:
Q  265 tgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    |||||| ||||| |||||||  |||| || |||| |||||||||||||||||||||||||||||||    
T  39954353 tgacaccgacacgccgacaccgctaataatttgagaaaatcacataatttagtgtaattatatgtg 39954288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 22197857 - 22197757
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| ||||   |||||||||||| ||||  |||| |||||| |||| || ||||| |||| || |||||||| ||||||||||||||||||||    
T  22197857 ctatgaagcacggatctagacacggacaccggacacgacacagacactaacacgccaacacagctaataatttgaaaaattcacataatttagtgtaatt 22197758  T
Q  323 a 323  Q
    |    
T  22197757 a 22197757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 24413675 - 24413615
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacac 284  Q
    |||||||||| ||||||||||||||||||||||||  |||| |||||||||| || |||||    
T  24413675 ctatgaagcacggatacggacacggacaccagacacgacacggacactgacatactgacac 24413615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 14731727 - 14731762
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    |||| |||||||||||||||||||||||||||||||    
T  14731727 ttgagaaaatcacataatttagtgtaattatatgtg 14731762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 20873050 - 20873113
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||| ||||||||||| |||||| |  ||| || ||||||||||||||||||||||||||||||    
T  20873050 acacggacactgacacgccgacatagataataatttgaaaaaatcacataatttagtgtaatta 20873113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 329
Target Start/End: Complemental strand, 24362318 - 24362211
Alignment:
Q  224 gctatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaat 321  Q
    |||||||||||  |||||||| ||||||||| || |  |||| ||||| ||||| |||||||  |||| || |||| | |||||||||||| ||||||||    
T  24362318 gctatgaagcacagatacggatacggacaccggatacgacacagacaccgacacgccgacaccgctaataatttgagagaatcacataattcagtgtaat 24362219  T
Q  322 tatatgtg 329  Q
    ||||||||    
T  24362218 tatatgtg 24362211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 24613509 - 24613564
Alignment:
Q  268 cactgacacaccgacacatctaaaacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||||||||||||||||| |||| | ||  ||||||||||||||| ||||||||||    
T  24613509 cactgacacaccgacacagctaataatttgaaaaatcacataattaagtgtaatta 24613564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 36450832 - 36450769
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||| ||||||||||| |||||||| |||| || |||||||||||||| |||| ||||||||||    
T  36450832 acacggacactgacacgccgacacaactaataatttgaaaaaatcacagaattcagtgtaatta 36450769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 13437064 - 13436990
Alignment:
Q  240 acggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatt 312  Q
    ||||||| ||||||| ||||| |||  ||||||||||| |||||||| |||| || |||||||||||||||||||    
T  13437064 acggacatggacaccggacatgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataatt 13436990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 325
Target Start/End: Original strand, 44067460 - 44067562
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| ||| || |||||||||||||||||  |||| ||||||||||| |||||||   ||| || |||| ||||| |||||||  |||||||||    
T  44067460 ctatgaagcacggacacagacacggacaccagacaccacaccgacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaatt 44067559  T
Q  323 ata 325  Q
    |||    
T  44067560 ata 44067562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Original strand, 8342987 - 8343016
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||||||||||||||||||||||||||||    
T  8342987 ttgaaaaaatcacataatttagtgtaatta 8343016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 24669384 - 24669429
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacatacactgacac 270  Q
    |||| |||||||||||||||||||||||| | ||| ||||||||||    
T  24669384 ctataaagcatggatacggacacggacacgacacagacactgacac 24669429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 329
Target Start/End: Original strand, 36934615 - 36934720
Alignment:
Q  226 tatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaaaactt-gaaaaaatcacataatttagtgtaatta 323  Q
    ||||||||||||||||||| ||  |||||| |||  |||| |||||| ||||  ||||||  |||| | || ||||||||||||||||| | ||||||||    
T  36934615 tatgaagcatggatacggatacaaacaccaaacacgacacggacactaacacgtcgacaccgctaataattcgaaaaaatcacataattcattgtaatta 36934714  T
Q  324 tatgtg 329  Q
    ||||||    
T  36934715 tatgtg 36934720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 3951644 - 3951612
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccaga 257  Q
    |||||||||| ||||||||||||||||||||||    
T  3951644 ctatgaagcacggatacggacacggacaccaga 3951612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 329
Target Start/End: Complemental strand, 13844669 - 13844605
Alignment:
Q  266 gacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    ||||| ||||| |||||||  |||| || |||| |||||||||||||| ||||||||||||||||    
T  13844669 gacacggacacgccgacactgctaataatttgagaaaatcacataattgagtgtaattatatgtg 13844605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 227 - 323
Target Start/End: Complemental strand, 11061189 - 11061091
Alignment:
Q  227 atgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||||||| ||||||||||||||||| | || |  |||| |||||||||||||||||||| |||| || ||||||||||||||||||||||| ||||||    
T  11061189 atgaagcacggatacggacacggacatcggatacgacacggacactgacacaccgacacagctaataatttgaaaaaatcacataatttagtataatta 11061091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 9408407 - 9408349
Alignment:
Q  266 gacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||||||||||||||||||  ||| || ||||||||||||||||||||||||||||||    
T  9408407 gacactgacacaccgacacaattaataatttgaaaaaatcacataatttagtgtaatta 9408349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 15902837 - 15902902
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatgtg--ggtgttgtgtcggtgttggacacaacac 357  Q
    |||| |||||||||||||||||||||||||||||||  |||||||||||||| | |||||| ||||    
T  15902837 ttgataaaatcacataatttagtgtaattatatgtgtcggtgttgtgtcggtatcggacacgacac 15902902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 357
Target Start/End: Original strand, 24339597 - 24339722
Alignment:
Q  236 ggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattata--tgtggg 331  Q
    ||||||||| ||||||||| ||||  |||  |||| |||||| |||||||| |||| || ||||||||||||||||||| |||||||||| |  ||| ||    
T  24339597 ggatacggatacggacaccggacacgacatggacattgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcgg 24339696  T
Q  332 tgttgtgtcggtgttggacacaacac 357  Q
    ||| |||||||||| |||||| ||||    
T  24339697 tgtcgtgtcggtgtcggacacgacac 24339722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 323
Target Start/End: Original strand, 25481846 - 25481946
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacata-cactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| |||||| |||||||||| | |||| | ||  |||| |||||| |||||||| |||| || ||||||||||||||||||| |||||||||    
T  25481846 ctatgaagcacggatacagacacggacatcggacacaacatggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatt 25481945  T
Q  323 a 323  Q
    |    
T  25481946 a 25481946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 357
Target Start/End: Original strand, 32308106 - 32308200
Alignment:
Q  266 gacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattatatgtg--ggtgttgtgtcggtgttggacacaacac 357  Q
    ||||||||||| |||||||  |||| || |||| |||||||||||||| ||||||||| ||||||   |||| ||||||||||||||||| ||||    
T  32308106 gacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattgtatgtgtcagtgtcgtgtcggtgttggacacgacac 32308200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 29787413 - 29787356
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatgtgggtgttgtgtcggtgttggaca 351  Q
    |||| |||||||||||||| ||||||||||| ||| |||||  |||||||||||||||    
T  29787413 ttgagaaaatcacataattcagtgtaattatgtgttggtgtaatgtcggtgttggaca 29787356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 329
Target Start/End: Complemental strand, 18213149 - 18213042
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaaaacttg--aaaaaatcacataatttagtgtaat 321  Q
    ||||||||||  |||||| ||||| ||||||||||  |||| |||||||| || |||||||| ||||   ||   | |||||||||||||||||||||||    
T  18213149 ctatgaagcacagatacgaacacgaacaccagacacgacacggacactgatacgccgacacaactaattttttttagaaaatcacataatttagtgtaat 18213050  T
Q  322 tatatgtg 329  Q
    ||||||||    
T  18213049 tatatgtg 18213042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 329
Target Start/End: Original strand, 20549778 - 20549841
Alignment:
Q  267 acactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    ||||||||||||||||||  |||| || |||| |||||||| ||||| ||||||||||||||||    
T  20549778 acactgacacaccgacaccgctaataatttgagaaaatcacgtaattcagtgtaattatatgtg 20549841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 38143238 - 38143273
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    ||||||||||||||||||||| ||||||||||||||    
T  38143238 ttgaaaaaatcacataatttaatgtaattatatgtg 38143273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 329
Target Start/End: Original strand, 1433398 - 1433504
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| |||||||| ||||||||||  |||  |||| |||| |||||| |||||||   ||| || |||| |||||||||| |||| ||||||||    
T  1433398 ctatgaagcacggatacgggcacggacaccgaacacgacacggacattgacacgccgacaccgttaataatttgagaaaatcacatcatttggtgtaatt 1433497  T
Q  323 atatgtg 329  Q
    |||||||    
T  1433498 atatgtg 1433504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 340
Target Start/End: Original strand, 5233615 - 5233692
Alignment:
Q  266 gacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattatatgtg--ggtgttgtgtc 340  Q
    |||||||||||||||| ||   ||| || |||| ||||||||||||| |||||||||||||||||  |||||||||||    
T  5233615 gacactgacacaccgatacggttaataatttgagaaaatcacataatctagtgtaattatatgtgttggtgttgtgtc 5233692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 9778451 - 9778505
Alignment:
Q  224 gctatgaagcatggatacggacacggacaccagaca-tacactgacactgacaca 277  Q
    ||||||||||| ||||||||||||||||||| ||||  |||| ||||||||||||    
T  9778451 gctatgaagcacggatacggacacggacaccggacacgacacggacactgacaca 9778505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 329
Target Start/End: Original strand, 22868023 - 22868092
Alignment:
Q  261 acactgacactgacacaccgacacatctaaaact-tgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    |||| ||||||||||| |||||||  |||| | | ||| |||||||||||||| ||||||||||||||||    
T  22868023 acaccgacactgacacgccgacaccactaataatatgagaaaatcacataattcagtgtaattatatgtg 22868092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 327
Target Start/End: Original strand, 41020515 - 41020544
Alignment:
Q  298 aaaaatcacataatttagtgtaattatatg 327  Q
    ||||||||||||||||||||||||||||||    
T  41020515 aaaaatcacataatttagtgtaattatatg 41020544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 323
Target Start/End: Original strand, 11831424 - 11831476
Alignment:
Q  272 gacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||||| ||||||| |||| || |||||||||||| |||||||||||||||||    
T  11831424 gacacatcgacacaactaataatttgaaaaaatcatataatttagtgtaatta 11831476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 325
Target Start/End: Original strand, 15680827 - 15680855
Alignment:
Q  297 aaaaaatcacataatttagtgtaattata 325  Q
    |||||||||||||||||||||||||||||    
T  15680827 aaaaaatcacataatttagtgtaattata 15680855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 327
Target Start/End: Complemental strand, 27093452 - 27093424
Alignment:
Q  299 aaaatcacataatttagtgtaattatatg 327  Q
    |||||||||||||||||||||||||||||    
T  27093452 aaaatcacataatttagtgtaattatatg 27093424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 327
Target Start/End: Original strand, 27184849 - 27184877
Alignment:
Q  299 aaaatcacataatttagtgtaattatatg 327  Q
    |||||||||||||||||||||||||||||    
T  27184849 aaaatcacataatttagtgtaattatatg 27184877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 322
Target Start/End: Original strand, 35861931 - 35862007
Alignment:
Q  247 cggacaccagacatacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    ||||||| | ||| ||||| ||||| |||| |||||||| |||| || ||||||||||||||||||| | |||||||    
T  35861931 cggacacgacacagacactaacactaacacgccgacacaactaataatttgaaaaaatcacataattcaatgtaatt 35862007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 357
Target Start/End: Original strand, 21522694 - 21522830
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| |||||||||||||| |||| ||||  |||| ||||||||||| |||||||| |||| || || ||||||| |||||||| |||||||||    
T  21522694 ctatgaagcacggatacggacacggtcaccggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaatt 21522793  T
Q  323 ata--tgtgggtgttgtgtcggtgttggacacaacac 357  Q
    | |  ||| ||||| |||||||||| |||||| ||||    
T  21522794 acaattgtcggtgtcgtgtcggtgtcggacacgacac 21522830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 357
Target Start/End: Original strand, 21533260 - 21533396
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| |||||||||||||| |||| ||||  |||| ||||||||||| |||||||| |||| || || ||||||| |||||||| |||||||||    
T  21533260 ctatgaagcacggatacggacacggtcaccggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaatt 21533359  T
Q  323 ata--tgtgggtgttgtgtcggtgttggacacaacac 357  Q
    | |  ||| ||||| |||||||||| |||||| ||||    
T  21533360 acaattgtcggtgtcgtgtcggtgtcggacacgacac 21533396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 14674250 - 14674313
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||| ||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||||    
T  14674250 acacggacactgacacgccgacacagctaataatttgaaaaaatcacataatttagtgtaatta 14674313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 6247609 - 6247666
Alignment:
Q  267 acactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||||||||| ||||||||||||| || ||||||||||||||||||| ||||||||||    
T  6247609 acactgacacgccgacacatctaataatttgaaaaaatcacataattcagtgtaatta 6247666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 324
Target Start/End: Original strand, 6770487 - 6770588
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| ||||||||| |||||||||  |||| |||| ||||||||||||| |||||| |||| || || | |||||||||||||| |||||| ||    
T  6770487 ctatgaagcacggatacggatacggacaccgaacatgacacggacactgacacactgacacaactaataatttaagaaaatcacataattcagtgtactt 6770586  T
Q  323 at 324  Q
    ||    
T  6770587 at 6770588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 21191158 - 21191071
Alignment:
Q  238 atacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||||||||| |||||| ||||  |||| ||||||||||  |||||||| |||| || ||||||||||||||||||| ||||||||||    
T  21191158 atacggacactgacaccggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 21191071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 22013373 - 22013460
Alignment:
Q  240 acggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattata 325  Q
    ||||| ||||||||| ||||  |||| ||||||||||| |||||||| |||| || ||| |||||| |||||||||||||||||||||    
T  22013373 acggatacggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaattacataatttagtgtaattata 22013460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 352
Target Start/End: Original strand, 41995417 - 41995544
Alignment:
Q  227 atgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaaaactt-gaaaaaatcacataatttagtgtaattat 324  Q
    |||||||| ||||||||||||||||||  || |  |||| ||||||||||| |||||||| |||| | || ||||||||||||||||| | ||||||||     
T  41995417 atgaagcacggatacggacacggacactggatacgacacagacactgacacgccgacacaactaataattcgaaaaaatcacataattcaatgtaattaa 41995516  T
Q  325 atgtgggtgttgtgtcggtgttggacac 352  Q
     ||| ||||  || ||||||| ||||||    
T  41995517 gtgtcggtgccgtatcggtgtcggacac 41995544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 357
Target Start/End: Original strand, 21541985 - 21542110
Alignment:
Q  236 ggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattata--tgtggg 331  Q
    ||||||||||||||||||||||||  |||| |||| |||||  |||||||| |||| || || |||| || |||||||| |||||||||| |  ||| ||    
T  21541985 ggatacggacacggacaccagacacgacacagacattgacatgccgacacaactaataatttaaaaagataacataattcagtgtaattacaagtgtcgg 21542084  T
Q  332 tgttgtgtcggtgttggacacaacac 357  Q
    ||| |||||||||| |||||| ||||    
T  21542085 tgtcgtgtcggtgtcggacacgacac 21542110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 325
Target Start/End: Original strand, 43564870 - 43564927
Alignment:
Q  267 acactgacacaccgacacatctaaaacttgaaaaaatcacataatttagtgtaattata 325  Q
    |||||||||| |||||||||| | || ||| ||||||||||||||||||||||||||||    
T  43564870 acactgacacgccgacacatc-ataatttggaaaaatcacataatttagtgtaattata 43564927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 323
Target Start/End: Original strand, 19579644 - 19579745
Alignment:
Q  224 gctatgaagcatggatacggacacggacaccagacata-cactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaat 321  Q
    ||||||||||| ||||||| |||| |||||| || | | ||| |||||||| || |||||||| |||| || |||| ||||||||||||||||||| |||    
T  19579644 gctatgaagcacggatacgtacaccgacaccggatacaacacggacactgatacgccgacacagctaataatttgagaaaatcacataatttagtgcaat 19579743  T
Q  322 ta 323  Q
    ||    
T  19579744 ta 19579745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 329
Target Start/End: Original strand, 27144444 - 27144513
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    |||| ||||||||||| |||||||  |||| || ||||  ||||||||||||||||||||||||||||||    
T  27144444 acacagacactgacacgccgacaccgctaataatttgaggaaatcacataatttagtgtaattatatgtg 27144513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 352
Target Start/End: Complemental strand, 37328944 - 37328828
Alignment:
Q  240 acggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattatatgtg--ggtgtt 335  Q
    |||||||||||||||  |||  |||| |||||||| ||||||||||| | || || ||| |||||||||| |||| |||||||||| |||||  |||||     
T  37328944 acggacacggacaccgaacacgacacggacactgatacaccgacacagcaaataatttgtaaaaatcacaaaattcagtgtaattacatgtgtcggtgtc 37328845  T
Q  336 gtgtcggtgttggacac 352  Q
    |||||||||| ||||||    
T  37328844 gtgtcggtgtcggacac 37328828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 320
Target Start/End: Complemental strand, 13287509 - 13287417
Alignment:
Q  230 aagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaa 320  Q
    ||||| ||||||||||||||||||| ||||  |||| |||||| ||||  |||||||  ||| || ||||||||||||||||||| |||||||    
T  13287509 aagcacggatacggacacggacaccggacacgacacggacactaacacgtcgacacagataataatttgaaaaaatcacataattcagtgtaa 13287417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 15382421 - 15382500
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaa 302  Q
    |||||||||| ||||||||||||||||||| ||||  |||| |||| |||||| |||||||| |||| || |||||||||    
T  15382421 ctatgaagcacggatacggacacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaa 15382500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 323
Target Start/End: Original strand, 33178014 - 33178069
Alignment:
Q  269 actgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||||||| |||||||| |||| || || |||||||||||||||||||||||||||    
T  33178014 actgacacgccgacacaactaataatttaaaaaaatcacataatttagtgtaatta 33178069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 356
Target Start/End: Original strand, 3966489 - 3966582
Alignment:
Q  266 gacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattatatgtg--ggtgttgtgtcggtgttggacacaaca 356  Q
    ||||||||||  |||||||  |||| || |||| ||||||||| |||| ||||||||||||||||  ||||| ||||| |||| ||||||||||    
T  3966489 gacactgacatgccgacaccgctaataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcgtgtcagtgtcggacacaaca 3966582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 21351978 - 21351920
Alignment:
Q  266 gacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||||||||||||||||||| |||| || | |||||| |||||||||| ||||||||||    
T  21351978 gacactgacacaccgacacaactaataattggaaaaagtcacataattcagtgtaatta 21351920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 31084309 - 31084367
Alignment:
Q  266 gacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||||||||| |||||||| |||| || ||||||||||||||||||| | ||||||||    
T  31084309 gacactgacacgccgacacagctaataatttgaaaaaatcacataattcaatgtaatta 31084367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 325
Target Start/End: Complemental strand, 36642876 - 36642775
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    ||||||||||||||||||||||  |||||| ||||  |||| ||||||||||| ||||||||  ||| || |||||||| | ||||| |||||||||| |    
T  36642876 ctatgaagcatggatacggaca-agacaccggacacgacacggacactgacacgccgacacagttaataatttgaaaaagtgacatattttagtgtaaat 36642778  T
Q  323 ata 325  Q
    |||    
T  36642777 ata 36642775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 39698527 - 39698585
Alignment:
Q  266 gacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||||||||| | |||||| |||| || ||||||||||||||||||| ||||||||||    
T  39698527 gacactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaatta 39698585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 42893346 - 42893404
Alignment:
Q  266 gacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||| |||||||||||||| |||| || ||||||||||||||||||  ||||||||||    
T  42893346 gacacggacacaccgacacagctaataatttgaaaaaatcacataatccagtgtaatta 42893404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 18592093 - 18592153
Alignment:
Q  299 aaaatcacataatttagtgtaattatatgtg--ggtgttgtgtcggtgttggacacaacac 357  Q
    ||||| |||||||| | ||||||||||||||  ||||| |||||||||| |||||||||||    
T  18592093 aaaattacataattcaatgtaattatatgtgccggtgtcgtgtcggtgtcggacacaacac 18592153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 254
Target Start/End: Complemental strand, 32426967 - 32426938
Alignment:
Q  225 ctatgaagcatggatacggacacggacacc 254  Q
    ||||||||||||||||||||||||||||||    
T  32426967 ctatgaagcatggatacggacacggacacc 32426938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 327
Target Start/End: Original strand, 35017052 - 35017085
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatg 327  Q
    |||| |||||||||||||||||||||||||||||    
T  35017052 ttgagaaaatcacataatttagtgtaattatatg 35017085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 24273074 - 24273038
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatgtgg 330  Q
    |||| |||||||||||||| |||||||||||||||||    
T  24273074 ttgagaaaatcacataattcagtgtaattatatgtgg 24273038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 24389140 - 24389176
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatgtgg 330  Q
    |||| |||||||||||||| |||||||||||||||||    
T  24389140 ttgagaaaatcacataattcagtgtaattatatgtgg 24389176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 225 - 323
Target Start/End: Original strand, 21479068 - 21479162
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacatacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||||||||||||||||||||||||||||| ||||      ||||||||||| |||||||| |||| || |||||||||||||| |||| ||||||||||    
T  21479068 ctatgaagcatggatacggacacggacaccggaca-----cgacactgacacgccgacacagctaataatttgaaaaaatcacacaattcagtgtaatta 21479162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 225 - 320
Target Start/End: Complemental strand, 10335401 - 10335304
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaa 320  Q
    |||||||||| ||||||| ||||||||||| ||||  |||| ||||||||||| |||||||| |||| || |||||||| ||||||| ||||||||||    
T  10335401 ctatgaagcacggatacgaacacggacaccggacacgacacggacactgacacgccgacacaactaataatttgaaaaagtcacatattttagtgtaa 10335304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 225 - 357
Target Start/End: Complemental strand, 15796409 - 15796273
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| ||||| ||||||||||||| ||||  |||| |||| |||||| ||||||||  ||| || |||||||||||| |||||| |||||||||    
T  15796409 ctatgaagcacggatatggacacggacaccggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcatataattcagtgtaatt 15796310  T
Q  323 ata--tgtgggtgttgtgtcggtgttggacacaacac 357  Q
    | |  ||| ||||| |||| ||||| |||||||||||    
T  15796309 acaattgtcggtgtcgtgtaggtgtcggacacaacac 15796273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 8587115 - 8587036
Alignment:
Q  246 acggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||||||| ||||| |||| ||||||||||| ||||||||||||  || ||||||||||||||||||| ||||||||||    
T  8587115 acggacaccggacatgacacggacactgacacgccgacacatctagtaatttgaaaaaatcacataattaagtgtaatta 8587036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 357
Target Start/End: Complemental strand, 4987363 - 4987270
Alignment:
Q  267 acactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattata--tgtgggtgttgtgtcggtgttggacacaacac 357  Q
    |||||||||| |||||||| |||| || ||||||||||||||||||| |||||||||| |  ||| ||||  ||||||||||||||||| ||||    
T  4987363 acactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgttggtgacgtgtcggtgttggacacgacac 4987270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 323
Target Start/End: Original strand, 14747511 - 14747606
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacatacactgacactgacacaccgacacatctaa-aacttgaaaa-aatcacataatttagtgtaatt 322  Q
    |||||||||| ||||||||| ||||||||| ||||      ||||||||||| |||||||| |||| || ||||||| ||||||||||||||||||||||    
T  14747511 ctatgaagcacggatacggatacggacaccggacac-----gacactgacacgccgacacagctaataatttgaaaaaaatcacataatttagtgtaatt 14747605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 226 - 320
Target Start/End: Complemental strand, 16000130 - 16000034
Alignment:
Q  226 tatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaa 320  Q
    ||||||||| |||||||||||||||||||  |||  |||| ||||||||||| |||||||| |||| || || ||||||| |||||||| |||||||    
T  16000130 tatgaagcacggatacggacacggacaccgaacacgacacagacactgacacgccgacacaactaataatttaaaaaaataacataattcagtgtaa 16000034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 329
Target Start/End: Complemental strand, 15314920 - 15314885
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    ||||||||||||||||||||||||||||||||||||    
T  15314920 ttgaaaaaatcacataatttagtgtaattatatgtg 15314885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 25064924 - 25064987
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatgtgggtgttgtgtcggtgttggacacaacac 357  Q
    ||||||||||||||||||||||||||||||| ||| ||| | |||| ||||| |||||| ||||    
T  25064924 ttgaaaaaatcacataatttagtgtaattatgtgttggtatcgtgttggtgtcggacacgacac 25064987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 325
Target Start/End: Complemental strand, 34307896 - 34307793
Alignment:
Q  224 gctatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaat 321  Q
    ||||||||||||||||||||||||| ||||| ||||| |||| |||||  |||| | |||||  |||| || |||| ||||||||||| || ||||||||    
T  34307896 gctatgaagcatggatacggacacgaacaccggacatgacacagacacgaacacgctgacaccgctaataatttgagaaaatcacatatttcagtgtaat 34307797  T
Q  322 tata 325  Q
    ||||    
T  34307796 tata 34307793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 55401056 - 55401119
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||| |||||||| || |||||||| |||| || ||||||||||||||||||||||||||||||    
T  55401056 acacggacactgatacgccgacacaactaataatttgaaaaaatcacataatttagtgtaatta 55401119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 10268559 - 10268501
Alignment:
Q  266 gacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||||||||| ||||||||  ||| || ||||||||||||||||||||||||||||||    
T  10268559 gacactgacacgccgacacagttaataatttgaaaaaatcacataatttagtgtaatta 10268501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 320
Target Start/End: Complemental strand, 3164140 - 3164043
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaa 320  Q
    |||||||||| |||||| |||||||||||| ||||  |||| |||| || |||  ||||||| |||| || ||||||||||||||||||| |||||||    
T  3164140 ctatgaagcacggatacagacacggacaccggacacgacacggacaatggcacgtcgacacagctaataatttgaaaaaatcacataattcagtgtaa 3164043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 352
Target Start/End: Original strand, 14829652 - 14829764
Alignment:
Q  243 gacacggacaccagacat-acactgacactgacacaccgacacatctaaaacttgaaaaaatcacataatttagtgtaattata--tgtgggtgttgtgt 339  Q
    |||| ||||||| ||||| |||| ||||||||||| |||||||| |||| | ||  ||||||||||||||| |  ||||||| |  ||| ||||| ||||    
T  14829652 gacatggacaccggacatgacacagacactgacacgccgacacagctaataatttgaaaaatcacataattcatggtaattacaagtgtcggtgtcgtgt 14829751  T
Q  340 cggtgttggacac 352  Q
    |||||||||||||    
T  14829752 cggtgttggacac 14829764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 7928465 - 7928500
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    ||||||||||||||||||| ||||||||||||||||    
T  7928465 ttgaaaaaatcacataattcagtgtaattatatgtg 7928500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 10954939 - 10954994
Alignment:
Q  267 acactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaat 321  Q
    |||||||||| |||||||| |||| || ||||||||||||||||||| ||||||||    
T  10954939 acactgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaat 10954994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 329
Target Start/End: Complemental strand, 11313844 - 11313809
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    |||| |||||||||||||||||||||||||||||||    
T  11313844 ttgagaaaatcacataatttagtgtaattatatgtg 11313809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 329
Target Start/End: Complemental strand, 32804584 - 32804549
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    |||| |||||||||||||||||||||||||||||||    
T  32804584 ttgagaaaatcacataatttagtgtaattatatgtg 32804549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 35994852 - 35994753
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaaaacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||||||||| ||||||||||| ||||||| ||||  |||  |||| |||||  |||||||| |||| | ||  ||||||||||||||| ||||||||||    
T  35994852 ctatgaagcacggatacggacatggacaccggacacgacatggacaatgacaagccgacacagctaataatttgaaaaatcacataattcagtgtaatta 35994753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 329
Target Start/End: Complemental strand, 49505198 - 49505163
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    |||| |||||||||||||||||||||||||||||||    
T  49505198 ttgagaaaatcacataatttagtgtaattatatgtg 49505163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 750734 - 750644
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacac-tgacacaccgacacatctaa-aacttgaaaaaatcacataatt 312  Q
    |||||||||| ||||||||||||||||||| ||||  |||| ||||| ||||||  ||||||| |||| || ||||||| |||||||||||    
T  750734 ctatgaagcacggatacggacacggacaccggacacgacacggacacttgacacggcgacacaactaataatttgaaaatatcacataatt 750644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 346
Target Start/End: Original strand, 2731832 - 2731881
Alignment:
Q  299 aaaatcacataatttagtgtaattatatgtg--ggtgttgtgtcggtgtt 346  Q
    |||||||||||||| ||||||||||||||||   ||||||||||||||||    
T  2731832 aaaatcacataattaagtgtaattatatgtgtatgtgttgtgtcggtgtt 2731881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Original strand, 1509554 - 1509583
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||||||||||||||||||||||||||||    
T  1509554 ttgaaaaaatcacataatttagtgtaatta 1509583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 324
Target Start/End: Original strand, 23915915 - 23916004
Alignment:
Q  237 gatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattat 324  Q
    |||||||||||||||||| ||||  |||| || |||||||  || ||||| |||| ||||||||||||||||| |||| | |||||||||    
T  23915915 gatacggacacggacaccggacacgacacagaaactgacatgccaacacagctaacaacttgaaaaaatcacacaattaaatgtaattat 23916004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 2620126 - 2620034
Alignment:
Q  266 gacactgacacaccgacacatctaaa-acttgaaaaaatcacataatttagtgtaattatatgtgggtgttgtgtcggtgttggacacaacac 357  Q
    ||||||||||| |||||||  ||||  | |||| |||||||||||||| ||||||| ||| ||| ||||| ||| ||||||| ||||| ||||    
T  2620126 gacactgacacgccgacaccactaatcatttgagaaaatcacataattaagtgtaactatgtgttggtgtcgtggcggtgttagacacgacac 2620034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 4201411 - 4201443
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaattatat 326  Q
    ||||||||||||||||||| |||||||||||||    
T  4201411 ttgaaaaaatcacataattaagtgtaattatat 4201443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 28917965 - 28918045
Alignment:
Q  245 cacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||||||||| ||||  |||| || |||||||| |||||| | |||| || ||||||||||||||||||| ||||||||||    
T  28917965 cacggacaccggacacgacacggaaactgacacgccgacatagctaataatttgaaaaaatcacataattcagtgtaatta 28918045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 329
Target Start/End: Original strand, 29508430 - 29508494
Alignment:
Q  266 gacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattatatgtg 329  Q
    |||| ||||||||||| ||  |||| || |||||||||||| |||||| ||||||||||||||||    
T  29508430 gacattgacacaccgataccactaataatttgaaaaaatcatataattcagtgtaattatatgtg 29508494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 32400811 - 32400775
Alignment:
Q  223 cgctatgaagcatggatacggacacggacaccagaca 259  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  32400811 cgctatgaagcatggatacggacacgaacaccggaca 32400775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 323
Target Start/End: Original strand, 34910309 - 34910361
Alignment:
Q  272 gacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||| |||||||| |||| || ||||||||||||||||||| ||||||||||    
T  34910309 gacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaatta 34910361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 40993376 - 40993344
Alignment:
Q  297 aaaaaatcacataatttagtgtaattatatgtg 329  Q
    |||||||||||||||| ||||||||||||||||    
T  40993376 aaaaaatcacataattcagtgtaattatatgtg 40993344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 323
Target Start/End: Original strand, 46626 - 46726
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||| ||||||||||||||||| | ||||  |||| |||| |||||| ||||||||  ||| || ||||||||||||||||||| |||||||||    
T  46626 ctatgaagcacggatacggacacggacatcggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcacataattcagtgtaatt 46725  T
Q  323 a 323  Q
    |    
T  46726 a 46726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 323
Target Start/End: Original strand, 130426 - 130526
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagaca-tacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatt 322  Q
    |||||||||||||||||||||||||||||| ||||  |||| |||| |||||  ||||||||  ||| |  ||||||||||||||||||| |||||||||    
T  130426 ctatgaagcatggatacggacacggacaccggacacgacacggacaatgacaagccgacacagttaatagtttgaaaaaatcacataattcagtgtaatt 130525  T
Q  323 a 323  Q
    |    
T  130526 a 130526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 356
Target Start/End: Original strand, 1016 - 1114
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattatatgtgg--gtgttgtgtcggtgttggacacaaca 356  Q
    |||| ||| |||||||||||||||  |||| || |||||||||| |||||||| ||||||| ||||||||   |||| |||||||||||||||||||||    
T  1016 acacagacgctgacacaccgacaccgctaataatttgaaaaaattacataattcagtgtaactatatgtgtcagtgtggtgtcggtgttggacacaaca 1114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 289 - 357
Target Start/End: Complemental strand, 44574 - 44504
Alignment:
Q  289 aaaacttgaaaaaatcacataatttagtgtaattatatgtg--ggtgttgtgtcggtgttggacacaacac 357  Q
    |||| |||| |||||||||||||| ||||||||||||||||  ||| | ||||||||||||||||||||||    
T  44574 aaaatttgagaaaatcacataattcagtgtaattatatgtgtcggtatcgtgtcggtgttggacacaacac 44504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 324
Target Start/End: Original strand, 241558 - 241639
Alignment:
Q  245 cacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattat 324  Q
    |||||||||| ||||  |||| ||||||||||| |||||||| |||| || ||| |||||||||||||||||||||||||||    
T  241558 cacggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaatcacataatttagtgtaattat 241639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 51792 - 51855
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||| ||||||||||| |||||||| |||| || ||||||||||||||||||| ||||||||||    
T  51792 acacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 51855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 325
Target Start/End: Original strand, 23371 - 23466
Alignment:
Q  225 ctatgaagcatggatacggacacggacaccagacatacactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||||||||| ||||||||||||||||||       |||| ||||||||||| ||||||||  ||| ||||  |||||||||||||||| ||||||||||    
T  23371 ctatgaagcacggatacggacacggacac------gacacagacactgacacgccgacacagataataactcaaaaaaatcacataattcagtgtaatta 23464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 325
Target Start/End: Original strand, 23497 - 23557
Alignment:
Q  267 acactgacacaccgacacatctaa-aacttgaaaa-aatcacataatttagtgtaattata 325  Q
    |||||||||||||||||||  ||| ||||| |||| |||||||||||| ||||||||||||    
T  23497 acactgacacaccgacacagttaataacttaaaaaaaatcacataattcagtgtaattata 23557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 357
Target Start/End: Original strand, 19557 - 19649
Alignment:
Q  261 acactgacactgacacaccgacacatctaaaacttgaaaaaatcacataatttagtgtaattatatgtgggtgttgtgtcggtgttggacacaacac 357  Q
    |||||||||||||||| |||| ||| |||| | ||  ||||||||||||||| |||||||||| |     ||||| |||||||||||||||| ||||    
T  19557 acactgacactgacacgccgatacaactaataatttgaaaaatcacataattcagtgtaattaca----agtgttatgtcggtgttggacacgacac 19649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 20153 - 20216
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    |||| |||| |||||| |||||||| |||| || ||||||||||||||||||| ||||||||||    
T  20153 acacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 20216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 7378 - 7324
Alignment:
Q  272 gacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaattata 325  Q
    ||||| |||||||| |||| || ||| ||||||||||||||||||||||||||||    
T  7378 gacacgccgacacaactaataatttggaaaaatcacataatttagtgtaattata 7324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 323
Target Start/End: Original strand, 13359 - 13444
Alignment:
Q  240 acggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||| ||||||||| || || |||| ||||||||||| |||||||| |||| || |||| |||||||||||||| |||| |||||    
T  13359 acggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatcacataattcagtgcaatta 13444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 21968 - 21883
Alignment:
Q  240 acggacacggacaccagacat-acactgacactgacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||| ||||||||| || || |||| ||||||||||| |||||||| |||| || |||| |||||||||||||| |||| |||||    
T  21968 acggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatcacataattcagtgcaatta 21883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Complemental strand, 17793 - 17764
Alignment:
Q  294 ttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||||||||||||||||||||||||||||    
T  17793 ttgaaaaaatcacataatttagtgtaatta 17764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 323
Target Start/End: Original strand, 14522 - 14574
Alignment:
Q  272 gacacaccgacacatctaa-aacttgaaaaaatcacataatttagtgtaatta 323  Q
    ||||| |||||||| |||| || ||||||||||||||||||| ||||||||||    
T  14522 gacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaatta 14574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 178897 - 178833
Alignment:
Q  261 acactgacactgacacaccgacacatctaa-aacttgaaaaaatca-cataatttagtgtaatta 323  Q
    |||| ||||||||||| |||||||| |||| || |||||||||||| ||||||| ||||||||||    
T  178897 acacggacactgacacgccgacacaactaataatttgaaaaaatcatcataattcagtgtaatta 178833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University