View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2830_low_7 (Length: 345)
Name: NF2830_low_7
Description: NF2830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2830_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 4246990 - 4246698
Alignment:
| Q |
16 |
caatccaaaacacttctcctcaaaaggatagttcaaaatgctgaagcaaaaccacactattttgtaaaaaattactctggtttcgttatttcacttagac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
4246990 |
caatccaaaacacttctcctcaaaaggatagttcaaaatgctgaagcaaaaccacactatcttgtaaaaaattactctggtttcattatttcacttagac |
4246891 |
T |
|
| Q |
116 |
atgtgaccagactttaatagacattacctatcctttttaatacatatctttcaaattgattttatcatttgcttagctagtgtgggtgnnnnnnntaatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
4246890 |
atgtgaccagactttaatagacattacctatcctttttaatacatatctttcaaattgatcttatcatttgcttagctagtgtgggtgaaaaaaataatc |
4246791 |
T |
|
| Q |
216 |
ataaatacattcgatgagtcttaccaaaccaagtgaacagaaattacatgctatttaattttatccatattaacataaaatatttatatgatcaccaatt |
315 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4246790 |
ataaatacattcgataagtcttaccaaaccaag----------------------taattttatccatattaacat-aaatatttatatgatcaccaatt |
4246714 |
T |
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