View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2830_low_9 (Length: 256)

Name: NF2830_low_9
Description: NF2830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2830_low_9
NF2830_low_9
[»] chr8 (5 HSPs)
chr8 (19-240)||(15305106-15305327)
chr8 (19-240)||(15485475-15485696)
chr8 (93-240)||(21247451-21247602)
chr8 (93-240)||(27679857-27680008)
chr8 (90-240)||(37209485-37209640)
[»] chr6 (2 HSPs)
chr6 (93-240)||(23427257-23427408)
chr6 (167-240)||(19816879-19816952)
[»] chr4 (5 HSPs)
chr4 (93-240)||(911079-911230)
chr4 (93-240)||(12435579-12435730)
chr4 (93-240)||(42410882-42411033)
chr4 (120-240)||(29333415-29333537)
chr4 (19-68)||(4393907-4393956)
[»] chr7 (1 HSPs)
chr7 (90-240)||(29185300-29185454)
[»] chr1 (2 HSPs)
chr1 (93-240)||(38990875-38991026)
chr1 (93-228)||(28519061-28519200)
[»] chr3 (2 HSPs)
chr3 (90-240)||(2978465-2978619)
chr3 (19-68)||(13980811-13980860)
[»] chr5 (2 HSPs)
chr5 (93-240)||(25365627-25365778)
chr5 (93-240)||(25365900-25366051)


Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 15305106 - 15305327
Alignment:
Q  19 ataacactcttcattggaggtccatcgaagatatacctcatgaaaaccttgctataaaaagctctagaaataattctagtgaaggaaagagtacaacatc 118  Q
    ||||||||||||||||||||||||||||  ||||||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  15305106 ataacactcttcattggaggtccatcgagaatatacctcataaaaaccttactataaaaagctctagaaaaaattctagtgaagaaaagagtacaacatc 15305205  T
Q  119 cttttgagcatgaattgcctcgcgaaaaaccaccagcaaaactcgataggataaaacaattgtgagtggaaaaagagtgcagaacattttactttctccc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15305206 cttttgagcatgaattgcctcgcgaaaaaccaccagcaaaactcgataggataaaacaattgtgagtggaaaaagagtgcagaacattttactttctccc 15305305  T
Q  219 catcatgaagacaattatctct 240  Q
    ||||||||||||||||||||||    
T  15305306 catcatgaagacaattatctct 15305327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 15485475 - 15485696
Alignment:
Q  19 ataacactcttcattggaggtccatcgaagatatacctcatgaaaaccttgctataaaaagctctagaaataattctagtgaaggaaagagtacaacatc 118  Q
    ||||||||||||||||||||||||||||  ||||||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  15485475 ataacactcttcattggaggtccatcgagaatatacctcataaaaaccttactataaaaagctctagaaaaaattctagtgaagaaaagagtacaacatc 15485574  T
Q  119 cttttgagcatgaattgcctcgcgaaaaaccaccagcaaaactcgataggataaaacaattgtgagtggaaaaagagtgcagaacattttactttctccc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15485575 cttttgagcatgaattgcctcgcgaaaaaccaccagcaaaactcgataggataaaacaattgtgagtggaaaaagagtgcagaacattttactttctccc 15485674  T
Q  219 catcatgaagacaattatctct 240  Q
    ||||||||||||||||||||||    
T  15485675 catcatgaagacaattatctct 15485696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 240
Target Start/End: Complemental strand, 21247602 - 21247451
Alignment:
Q  93 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 188  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  21247602 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 21247503  T
Q  189 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 240  Q
    ||||||||||||||||  ||  ||||||||| |||||||||||| |||||||    
T  21247502 aaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctct 21247451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 240
Target Start/End: Original strand, 27679857 - 27680008
Alignment:
Q  93 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 188  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  27679857 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 27679956  T
Q  189 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 240  Q
    ||||||||||||||||  ||  ||||||||| |||||||||||| |||||||    
T  27679957 aaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctct 27680008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 240
Target Start/End: Complemental strand, 37209640 - 37209485
Alignment:
Q  90 aattctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtg-ag 184  Q
    |||||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||| ||    
T  37209640 aattctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccagaaaaacccaatgggataaaaccttggtgaag 37209541  T
Q  185 tggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 240  Q
       |||||||||||||||||  ||  ||||||||| |||||||||||| |||||||    
T  37209540 gaaaaaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctct 37209485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 240
Target Start/End: Complemental strand, 23427408 - 23427257
Alignment:
Q  93 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 188  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  23427408 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 23427309  T
Q  189 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 240  Q
    ||||||||||||||||  ||  ||||||||| |||||||||||| |||||||    
T  23427308 aaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctct 23427257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 19816879 - 19816952
Alignment:
Q  167 ggataaaacaattgtgagtggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 240  Q
    ||||||||| || ||||| ||||||||||||||||| |  ||  ||||||||| ||||||||||||||||||||    
T  19816879 ggataaaaccatggtgaggggaaaaagagtgcagaagacatttatttctccccctcatgaagacaattatctct 19816952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 240
Target Start/End: Original strand, 911079 - 911230
Alignment:
Q  93 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 188  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  911079 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 911178  T
Q  189 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 240  Q
    ||||||||||||||||  ||  ||||||||| |||||||||||| |||||||    
T  911179 aaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctct 911230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 240
Target Start/End: Original strand, 12435579 - 12435730
Alignment:
Q  93 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 188  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  12435579 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 12435678  T
Q  189 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 240  Q
    ||||||||||||||||  ||  ||||||||| |||||||||||| |||||||    
T  12435679 aaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctct 12435730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 240
Target Start/End: Complemental strand, 42411033 - 42410882
Alignment:
Q  93 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 188  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  42411033 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 42410934  T
Q  189 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 240  Q
    ||||||||||||||||  ||  ||||||||| |||||||||||| |||||||    
T  42410933 aaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctct 42410882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 240
Target Start/End: Complemental strand, 29333537 - 29333415
Alignment:
Q  120 ttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtggaaaaagagtgcagaacattttactttctcc 217  Q
    |||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||||||||||||||||||  ||  |||||||    
T  29333537 ttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaagggaaaaagagtgcagaacacatttatttctcc 29333438  T
Q  218 ccatcatgaagacaattatctct 240  Q
    || |||||||||||| |||||||    
T  29333437 ccctcatgaagacaaatatctct 29333415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 4393907 - 4393956
Alignment:
Q  19 ataacactcttcattggaggtccatcgaagatatacctcatgaaaacctt 68  Q
    |||||||||| ||||||| ||||||||| |||||||||||  ||||||||    
T  4393907 ataacactctccattggatgtccatcgaggatatacctcaataaaacctt 4393956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 240
Target Start/End: Complemental strand, 29185454 - 29185300
Alignment:
Q  90 aattctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagt 185  Q
    |||||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||      
T  29185454 aattctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaag 29185355  T
Q  186 ggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 240  Q
    | |||||||||||||||||  ||  ||||||||| |||||||||||| |||||||    
T  29185354 gaaaaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctct 29185300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 240
Target Start/End: Complemental strand, 38991026 - 38990875
Alignment:
Q  93 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 188  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  38991026 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 38990927  T
Q  189 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 240  Q
    ||||||| ||||||||  ||  ||||||||| |||||||||||| |||||||    
T  38990926 aaaagagcgcagaacacatttatttctccccctcatgaagacaaatatctct 38990875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 228
Target Start/End: Complemental strand, 28519200 - 28519061
Alignment:
Q  93 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 188  Q
    ||||||||||||||  |||||||| |||||||||||  |||||| |||||  ||||| |  ||||| ||||| | || |||||||||  | ||||   ||    
T  28519200 tctagtgaaggaaaaagagtacaatatccttttgagtttgaatttcctcgttaaaaatcttaccaggaaaacccaatgggataaaaccttggtgaagaga 28519101  T
Q  189 aaaagagtgcagaacattttactttctccccatcatgaag 228  Q
    ||||||||||||||||  ||  ||||||||| ||||||||    
T  28519100 aaaagagtgcagaacacatttatttctccccctcatgaag 28519061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 240
Target Start/End: Original strand, 2978465 - 2978619
Alignment:
Q  90 aattctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagt 185  Q
    |||||||||||||||||  |||||||| ||| |||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||      
T  2978465 aattctagtgaaggaaaaagagtacaatatctttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaag 2978564  T
Q  186 ggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 240  Q
    | |||||||||||||||||  ||  ||||||||| |||||||||||| |||||||    
T  2978565 gaaaaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctct 2978619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 13980811 - 13980860
Alignment:
Q  19 ataacactcttcattggaggtccatcgaagatatacctcatgaaaacctt 68  Q
    |||||||||||| ||||| ||||||||| ||||| |||||| ||||||||    
T  13980811 ataacactcttccttggatgtccatcgaggatatgcctcattaaaacctt 13980860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 240
Target Start/End: Original strand, 25365627 - 25365778
Alignment:
Q  93 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 188  Q
    ||||||||||||||  |||||||| |||||||||||  |||||||||||   |||||||  ||||| ||||| | || |||||||||  | ||||  | |    
T  25365627 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcattaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggaa 25365726  T
Q  189 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 240  Q
    ||||||||||| ||||  ||  ||||||||| |||||||||||| |||||||    
T  25365727 aaaagagtgcataacacatttatttctccccctcatgaagacaaatatctct 25365778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 240
Target Start/End: Original strand, 25365900 - 25366051
Alignment:
Q  93 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 188  Q
    ||||||||||||||  |||||||| |||||||||||  |||||||||||   |||||||  ||||| ||||| | || |||||||||  | ||||  | |    
T  25365900 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcattaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggaa 25365999  T
Q  189 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 240  Q
    ||||||||||| ||||  ||  ||||||||| |||||||||||| |||||||    
T  25366000 aaaagagtgcataacacatttatttctccccctcatgaagacaaatatctct 25366051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University