View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2831_high_3 (Length: 448)
Name: NF2831_high_3
Description: NF2831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2831_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 21 - 438
Target Start/End: Complemental strand, 51756348 - 51755925
Alignment:
| Q |
21 |
atccaaattaattaacccaccaccatatatacattgatgatagcaatattattataacatacttatgtttctctatctaatctaattagtgattactacc |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51756348 |
atccaaattaattaacccaccaccatatatacattgatgataacaatattattataacatacttatgtttctctatctaatctaattagtgattactacc |
51756249 |
T |
|
| Q |
121 |
atacaagaacatacaactgaagctgttatttgattcctccatttgcaaaggaagcaaactcgaaatcttcatcccaaaacctaacaacgttgccattaat |
220 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
51756248 |
atacaagaacatacagctgaagctgttatttgattcctccatttgcaaaggaagcaaactcgaactcttcatcccaaaacctaacaacgttgccgttaat |
51756149 |
T |
|
| Q |
221 |
caccgttaaatcttggcatgtataccacccaccttcgttctctccagttcttgtcctcaacaagttttcccaactctcccaccaccctaatcttccttct |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51756148 |
caccgttaaatcttggcatgtataccacccaccttcgttctctccagttcttgtcctcaacaagttttcccaactctcccaccaccctaatcttccttct |
51756049 |
T |
|
| Q |
321 |
ttctcttcccataattcctccgttannnnnnnnaacgtctcaacactttccttgcattctctgtcaatgtcatcttcatc------gtcataataataca |
414 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51756048 |
ttctcttcccataattcctccgttattttttttaacgtctcaacactctccttgcattctctgtcaatgtcatcttcatcttcatggtcataataataca |
51755949 |
T |
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| Q |
415 |
aggtaaacttcatctttccctttg |
438 |
Q |
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|||||||||||||||||||||||| |
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| T |
51755948 |
aggtaaacttcatctttccctttg |
51755925 |
T |
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