View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2831_high_4 (Length: 370)
Name: NF2831_high_4
Description: NF2831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2831_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 42740359 - 42740648
Alignment:
| Q |
18 |
agattgaaccgatgagaccttcggtttatggttaaatcagttcaaccggttaaaccgttatgaaccattattgaaccggttaatgaataaataaatatga |
117 |
Q |
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| T |
42740359 |
agattgaaccgatgagaccttcggttcatggttcaatcggttcaaccgattaaaccgttatgaaccattattgaaccggttaatgaataaataaatatga |
42740458 |
T |
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| Q |
118 |
agataaatcaagaaaaacctctaaagattttattaattttcatattttaatgcaaccctagatattaatccatttagttgactcattgggaccaagtcca |
217 |
Q |
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| T |
42740459 |
agataaatcaagaaaaacctctaaagattttattaattttcatattttaatgcaaccctagatattaatccatttaattgactcattgggcccaagtcca |
42740558 |
T |
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| Q |
218 |
aatcaaagtatccaaccctagatataaattagttgttgtatgactttgtatcacatttgttggtaatatttcctaagtcgccgctaacaaa |
308 |
Q |
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| T |
42740559 |
aatcaaagtatccaaccctagatataaattagttgttgtatgac-ttgtatcacatttgttagtaatatttcctaagtcgccgctaacaaa |
42740648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 258
Target Start/End: Original strand, 21744565 - 21744809
Alignment:
| Q |
15 |
cagagattgaaccgatgagaccttcggtttatggttaaatcagttcaaccggttaaaccgttatgaaccattattgaaccggttaatgaataaataaata |
114 |
Q |
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| T |
21744565 |
cagagattgaaccgatgagatcttcggttcatggttcaatcggttcaaccggttaaaccgttatgaaccattattgaaccggttaatgaataaataaata |
21744664 |
T |
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| Q |
115 |
tgaagataaatcaagaaaaacctctaaagattttattaattttcatattttaatgcaaccctagatattaatccatttagttgactcattgggaccaagt |
214 |
Q |
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| T |
21744665 |
tgaagataaatcaagaaaaacct-taaagattttattaattttcatattttaatgcaaccctagatattaatccatttagttgactcattggcccctagt |
21744763 |
T |
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| Q |
215 |
ccaaatcaaagtatccaaccctagatataaatt--agttgttgtat |
258 |
Q |
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| T |
21744764 |
ccaaatcaaagtatccaaccctagatataaattacagttgttgtat |
21744809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 20218081 - 20218029
Alignment:
| Q |
15 |
cagagattgaaccgatgagaccttcggtttatggttaaatcagttcaaccggt |
67 |
Q |
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| T |
20218081 |
cagagattgaaccggtgagaccttcggttcatggttcaaccggttgaaccggt |
20218029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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