View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2831_high_6 (Length: 362)
Name: NF2831_high_6
Description: NF2831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2831_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 37929144 - 37928821
Alignment:
| Q |
17 |
agattggataagagagaatagtttaacaggtacgcacgaataaaataaattgatattttaagtatacgtacattaatagatattgaggcagaggtaataa |
116 |
Q |
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| T |
37929144 |
agattggataagagagaatagtttaacaggtacgcacgaataaaataaattgatattt-aagtatacgtacattaatagatattgaggcagaggtaataa |
37929046 |
T |
|
| Q |
117 |
tatttgtgtactcatctaaattcttgctcgtaaatagagatatcttaatatcatatttcttaaatataaatcttcgctgcatgaaataaactctaatcaa |
216 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37929045 |
tatttgtgtactcatctaaattcttgctcgtaagtagagatatcttaatatcatatttcttaaatataaatcttcgctgcatgaaataaactctaatcaa |
37928946 |
T |
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| Q |
217 |
atgttcacccnnnnnnnnnnnnnnctctaatcaaatttcataatatattatttttgtttgattaataactgttaatgtgaaagtgtatggtattactacc |
316 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37928945 |
atgttcaccc-aaaaaaaaaaaaactctaatcaaatttcataatatattatttttgtttgattgataactgttaatgtgaaagtgtatggtattactacc |
37928847 |
T |
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| Q |
317 |
tctcttcatttgtcgttaatatcata |
342 |
Q |
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||| |||||||||||||||||||||| |
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| T |
37928846 |
tctgttcatttgtcgttaatatcata |
37928821 |
T |
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