View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2831_high_8 (Length: 304)
Name: NF2831_high_8
Description: NF2831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2831_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 20433379 - 20433669
Alignment:
| Q |
1 |
cattattgtcagcatgtaagatatgaattcgttcattgtattattcgtcgtaattgtttttaacaatttccatccatctatgcatgcaattgatggattt |
100 |
Q |
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| T |
20433379 |
cattattgtcagcatgtatgatatgaattccttcattgtattattcgtcgtaattgtttttaaccgtt----tccatctatgcatgcaattgatagattt |
20433474 |
T |
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| Q |
101 |
attgatcattttctttgacagtgatagttgctcaaacttcaaagagatctaaacaaccggcaagcnnnnnnnctaagggaaatggttccaaaattgttac |
200 |
Q |
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| T |
20433475 |
attgatcattttctttgacagtgatagttgctcaaacttcaaagagatctaaacaatcggcaagcaaaaaaactaagggaaatggttccaaaattgttac |
20433574 |
T |
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| Q |
201 |
tatgttttctcctctgtggcactttataccatggtcatgtttttattatatgaataacaaaatactaaattagatataaggcatatgttttcttctct |
298 |
Q |
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| T |
20433575 |
tatgttttctcctcagtggcactttatacca---tcatgtttttattatatgaataacaaaatattaaattagatataaggcatatgttttcttctct |
20433669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 298
Target Start/End: Complemental strand, 20433030 - 20432914
Alignment:
| Q |
185 |
gttccaaaattgttactatgttttctcctctgtggcactttataccatggtcat----gtttttattatatgaataacaaaatactaaattagatataag |
280 |
Q |
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| T |
20433030 |
gttccaaaattgttggtatgttttctcctcggtggcactttataccatggtcatgtacgtttctattatatgaataactaaa-attaaattagatacaag |
20432932 |
T |
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| Q |
281 |
gcatatgttttcttctct |
298 |
Q |
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| T |
20432931 |
gcatacatttgcttctct |
20432914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 20433167 - 20433107
Alignment:
| Q |
14 |
atgtaagatatgaattcgttcattgtattattcgtcgtaattgtttttaacaatttccatc |
74 |
Q |
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| T |
20433167 |
atgtaagatatgaaatcattcattgtgttaatcgtcgtaaccgtttttaacatttttcatc |
20433107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 17344629 - 17344477
Alignment:
| Q |
1 |
cattattgtcagcatgtaagatatgaattcgttcattgtattattcgtcgtaattgtttttaacaatttccatccatctatgcatgcaattgatggattt |
100 |
Q |
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| T |
17344629 |
cattatttttagcatgtaagatatgagttccttcattatgttatttgtcgaaattgtttttaacatcttctatctattgatgcat----ttgatagattt |
17344534 |
T |
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| Q |
101 |
attgatcattttctttgacagtga-tagttgctcaaacttcaaagagatctaaacaa |
156 |
Q |
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| T |
17344533 |
attgatcattttctttaacagttatttgtcgctaaaacttcaaagagatctaaacaa |
17344477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 17344201 - 17344292
Alignment:
| Q |
73 |
tccatctatgcatgcaattgatggatttattgatcattttctttgacagtgatagttgctcaaacttcaaagagatctaaacaaccggcaag |
164 |
Q |
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||||| |||||||||| || || |||| || |||||||| ||||| || || |||||||||||||||||||||| |||||| ||||||| |
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| T |
17344201 |
tccatttatgcatgcatttaatagattaataaatcattttatttgatagcgaccgttgctcaaacttcaaagagatacaaacaatcggcaag |
17344292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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