View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2831_low_11 (Length: 346)
Name: NF2831_low_11
Description: NF2831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2831_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 6540378 - 6540691
Alignment:
| Q |
19 |
cagagaagtctattttggttgtaattaaataattttatannnnnnnacctttaattgatgagtatttactaaaatgaataacatggtaacatttt-ttat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
6540378 |
cagagaagtctattttggttgtaattaaataattttttatttttttacctttaattgatgagtatttactaaaatgaatgacatggtaacatttttttat |
6540477 |
T |
|
| Q |
118 |
acaagcagtgttctaagggatccaaataactgactgtagttctctctcatgttgcaagaaatttgtattgtttatataacggactagaaaagagaacaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6540478 |
acaagcagtgttctaagggatccaaataactgactgtagctctctctcatgttgcaagaaatttgtattgtttatataacggactaaaaaagagaacaat |
6540577 |
T |
|
| Q |
218 |
atccgatttaaatgttaatggactagaaaacaaacgctcaaaaagttggaaaagtgcagccaatttagcattcttttgctgagtcttgagaaaagggtta |
317 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6540578 |
atccgatttatatgttaatggactagaaaacaaacgctcaaaaggttggaaaagtgcagccaatttagcattcttttgctgagtcttgagaaaagggtta |
6540677 |
T |
|
| Q |
318 |
ttcctagggtatct |
331 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
6540678 |
ttcttagggcatct |
6540691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 6543040 - 6543076
Alignment:
| Q |
288 |
ttcttttgctgagtcttgagaaaagggttattcctag |
324 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6543040 |
ttcttttgttgagtcttgagaaaagggttattcctag |
6543076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University