View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2831_low_2 (Length: 605)
Name: NF2831_low_2
Description: NF2831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2831_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 19 - 594
Target Start/End: Original strand, 29718295 - 29718868
Alignment:
| Q |
19 |
gaaatggtacactatgttattcatgatgtgttatcattttgctgttttgttttaatgacggtcttgtctcttatcataaagcaaggattgatcatgcaca |
118 |
Q |
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| T |
29718295 |
gaaatggtacactatgttattcatg--gtgttatcattttgctgttttgttttcacgacggtattgtctcttatcataaagcaaggattgatcatgcaca |
29718392 |
T |
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| Q |
119 |
actacacgaacaaggttagaagctgctccgtgcttggaataagcgcgattctgtgtgccggtctgcttcaatgtggcacctgctttctcctccaagctct |
218 |
Q |
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| T |
29718393 |
actacacgaacaaggttagaagctgctccgtgtttggaataagcgcgattctgtgtgccagtctgcttcaatgtggcacctgctttctcctccaagctct |
29718492 |
T |
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| Q |
219 |
attcaatatattttccatcattattggcattaaattttgttttgttgtccttccagtctttatgcttattgctatatgcgttggcttttatgcaattcaa |
318 |
Q |
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| T |
29718493 |
attcaatatactttccatcattattggcattaaattttgttttgttgtccttccactctttatgcttattgctatatgcgttggcttttatgcaattcaa |
29718592 |
T |
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| Q |
319 |
ttgcgtgtgataattatcgagtgataacattaatagtagtataaataaaattgaagctatacttggaagcagactctttagcttaacttggaagcaacaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29718593 |
ttgcgtgtgataattatcgagtgataacattaatagtagtataaataaaattgaagctatacttggaagcagactctttagcttaacttggaagcaacaa |
29718692 |
T |
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| Q |
419 |
gaatctcagttagaaatgaagaagctaagaagggatggagtgtgaattttaaagattggttctgctttcaattttccaacttttaggaaatgaattagaa |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29718693 |
gaatctcagttagaaatgaagaagctaagaagggatggagtgtgaattttaaagattggttctgctttcaattttccaacttttaggaaatgaattagaa |
29718792 |
T |
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| Q |
519 |
taaattgagtttgaataaaaagctttcaatttttcttatcttagttgctgtgtgtctgatgagattaaatgttcat |
594 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29718793 |
taaattgagtttgaatagaaagctttcaatttatcttatcttagttgctgtgtgtctgatgagattaaatgttcat |
29718868 |
T |
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