View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2831_low_3 (Length: 538)
Name: NF2831_low_3
Description: NF2831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2831_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 528
Target Start/End: Original strand, 45216569 - 45217077
Alignment:
| Q |
18 |
tcttctagaataagcaaactatggttctttcaaagactcaaaatggtgacggcaaaataagttgccttgtgaatttaggtgagtcaatatcatcaaaagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45216569 |
tcttctagaataagcaaactatggttctttcaaagactcaaaatggtgacggcacaataagttgctttgtgaatttaggtgagtcaatatcatcaaaagt |
45216668 |
T |
|
| Q |
118 |
gacattaggttcaagcacatcataaaagactaaactacagattttgttgcatatatcatggttgataaagcgctcctaatgttcgtgaacatcttcacaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
45216669 |
gacattaggttcaagcacatcataaaagactaaactacagattttgttgtatatatcatggttgatgaagcgctcctaatgttcatgaacatcttcacaa |
45216768 |
T |
|
| Q |
218 |
tcacaaataacatgcataatcgatccatcaagggggtcatgtgttgatgtatcccctcttcatcattagcaaggatcctcccatgacacacttttataag |
317 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45216769 |
tcacaaataacatgcataattgatccatcaagggggtcatgtgttgatgtttcctctcttcatcattagcaaggatcctcccatgacacacttttataag |
45216868 |
T |
|
| Q |
318 |
aaagcacaggattttttaggtacatgtcaattccaagtnnnnnnnnnnnnnnnnncacattggtattctacaaccaactaggaataagtttgacttccga |
417 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45216869 |
aaagcacaggattttttaggtccatgtcaattccaag--caaaaaaaaaaaaaaacacattggtattctgcaaccaactaggaataagtttgacttccga |
45216966 |
T |
|
| Q |
418 |
gaggtcaagtcgactcacaatgaaggcgatgttgatggtgccgagatctacatacaactcacacccttgaaggtcgcacagaaaggtgcattctccacca |
517 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45216967 |
gaggtcaagtcggctcacaatgaaggcgatgttgatggtgccgagatctacatacaactcacacccttggaggtcgcacagaaaggtgcattctccacca |
45217066 |
T |
|
| Q |
518 |
tggtacctttg |
528 |
Q |
| |
|
||||||||||| |
|
|
| T |
45217067 |
tggtacctttg |
45217077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University