View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2831_low_4 (Length: 538)
Name: NF2831_low_4
Description: NF2831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2831_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 12937757 - 12937236
Alignment:
| Q |
1 |
cagagacaacgtggactttgataactgcttcttgatgggaagtagtgcaggaggtaacatagcgtacttcgcaggtctacgtgctcttgacctcgatctc |
100 |
Q |
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| T |
12937757 |
cagagacaacgtggactttgataactgcttcttgatgggaagtagtgcaggaggtaacatagcgtacttcgcaggtctacgtgctcttgacctcgatctc |
12937658 |
T |
|
| Q |
101 |
tctcctcttaagatccaagggcttataatgaatgctccattttttggtggggttcagagaacaaaatccgagcttcgtttcattaacgataatatactac |
200 |
Q |
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| T |
12937657 |
tctcctcttaagatccaagggcttataatgaatgctccgttttttggtggggttcagagaacaaaatctgagcttcgtttcattaacgataatatactac |
12937558 |
T |
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| Q |
201 |
ccttatcagcaagtgatctcatgtgggccctatctttgcctgagggcacagatcgggatcacgtgtattgtgatccaaaagtttcggatgtgatacatgg |
300 |
Q |
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| T |
12937557 |
ccttatcagcaagtgatctcatgtgggccctatctttgcctgagggtacagatcgggatcacgtgtattgtaatccaaaagtttcggatgtgatacatgg |
12937458 |
T |
|
| Q |
301 |
tgagaagatcggacggctgccgaggtgctttgttaacggctacggtggggatcccttggtggataggcaaaaggagctagtgaagattttggaggcacgt |
400 |
Q |
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| T |
12937457 |
tgagaagatcggacggctgccgaggtgctttgttaacggctacggtggggatcccttggtggataggcaaaaggagctagtgaagattttggaggcacgt |
12937358 |
T |
|
| Q |
401 |
ggggtgcacgtggagtctgttttttgtgaggatgggtttcatgctgtggaactctttgatcctgctaaggcacaagcattacttgattacgttaagaaat |
500 |
Q |
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| T |
12937357 |
ggggtgcacgtggagtctgttttttgtgaggatgggtttcatgctgtggaactctttgatcctgctaaggcacaagcattacttgattacgttaagaaat |
12937258 |
T |
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| Q |
501 |
ttatttcctcggttgatactta |
522 |
Q |
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| T |
12937257 |
ttatttcctcggttgatactta |
12937236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 12945429 - 12944926
Alignment:
| Q |
1 |
cagagacaacgtggactttgataactgcttcttgatgggaagtagtgcaggaggtaacatagcgtacttcgcaggtctacgtgctcttgacctcgatctc |
100 |
Q |
| |
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||||||| |||||||||||||||| ||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||| ||||| |||||| |
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| T |
12945429 |
cagagaccacgtggactttgataaatgcttcttgatgggagacagtgccggaggtaacatagcctatttcgcaggtctacgtgctctcgaccttgatctc |
12945330 |
T |
|
| Q |
101 |
tctcctcttaagatccaagggcttataatgaatgctccattttttggtggggttcagagaacaaaatccgagcttcgtttcattaacgataatatactac |
200 |
Q |
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|||| |||| |||| |||| | |||||||| |||||||||| ||||||| |||||||| |||| ||||||||||| | |||||| |||| ||| |
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| T |
12945329 |
tctcacattaaaatccgagggatcataatgaaatatccattttttagtggggtccagagaacggaatctgagcttcgtttggtcaacgatcgtatattac |
12945230 |
T |
|
| Q |
201 |
ccttatcagcaagtgatctcatgtgggccctatctttgcctgagggcacagatcgggatcacgtgtattgtgatccaaaagtttcggatgtgatacatgg |
300 |
Q |
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| ||| ||||| |||| ||||||||| ||||| |||||| ||||||| ||| |||| |||| |||||| |||||| | || |||| || | || |
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| T |
12945229 |
cattaccagcaggtgacctcatgtggttcctatgtttgcccgagggcaaagacagggaccacgagtattgcaatccaacaactttggatcacgtatacgg |
12945130 |
T |
|
| Q |
301 |
tgagaagatcggacggctgccgaggtgctttgttaacggctacggtggggatcccttggtggataggcaaaaggagctagtgaagattttggaggcacgt |
400 |
Q |
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||| ||||| |||||| |||| |||||||||||||| ||||||||||| ||||| |||||||||| ||| |||||||| | ||||||||||| ||||||| |
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| T |
12945129 |
tgaaaagattggacggttgccaaggtgctttgttaatggctacggtggagatccattggtggataagcagaaggagctggcgaagattttggcggcacgt |
12945030 |
T |
|
| Q |
401 |
ggggtgcacgtggagtctgttttttgtgaggatgggtttcatgctgtggaactctttgatcctgctaaggcacaagcattacttgattacgttaagaaat |
500 |
Q |
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||||||||||||||||| |||| ||||||||||| ||||||||||||| ||||||||| | |||||||||||| || ||||| | |||||||||| |
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| T |
12945029 |
ggggtgcacgtggagtcctgttttgatgaggatgggtatcatgctgtggaaatctttgatcgttctaaggcacaagttttgcttgaaaatgttaagaaat |
12944930 |
T |
|
| Q |
501 |
ttat |
504 |
Q |
| |
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|||| |
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| T |
12944929 |
ttat |
12944926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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