View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2831_low_9 (Length: 366)
Name: NF2831_low_9
Description: NF2831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2831_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 343
Target Start/End: Complemental strand, 42104130 - 42103806
Alignment:
| Q |
16 |
aaacatgtatgtgagtggaaggccattgcactaccctcctatcatgcctcatgaaactgcttataatcttgaccttacagtcgcggaatatggtcctcgt |
115 |
Q |
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| T |
42104130 |
aaacatgtatgttagtggaaggccattgcactaccctcctgacatgcctcatgaaactgcttataatcttgaccttacagtcgcggaatatggtcctcgt |
42104031 |
T |
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| Q |
116 |
caggaagggcagcatcagcatctgcagcctggcctagccgtgaacattgatccaattattaggcagccagagaatgctgcaatcactatgcctgcagcaa |
215 |
Q |
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| T |
42104030 |
caggaagggcagcatcagcatctgcagtccggcctagccgtgaacattgatccaatta---ggcagccagagaatgctgcaatcactatgcctgcagcaa |
42103934 |
T |
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| Q |
216 |
atatgaaaggtgacgaaatcacaggaggagacataaattatttcgctaaagacgcattccaaaacgagctggataggtttggatcaccaattactaacat |
315 |
Q |
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| T |
42103933 |
atatgaaaggtgacgaaatcactggaggagacataaattatttcgctaaagacgcattccaaaacgagctggataggtttggatcaccaatcactaacat |
42103834 |
T |
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| Q |
316 |
gtcatttgattttggagttcttgacaat |
343 |
Q |
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| T |
42103833 |
gtcatttgattttggagttcttgacaat |
42103806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 59 - 343
Target Start/End: Complemental strand, 42113277 - 42112996
Alignment:
| Q |
59 |
atgcctcatgaaactgcttataatcttgaccttacagtcgcggaatatggtcctcgtcaggaagggcagcatcagcatctgcagcctggcctagccgtga |
158 |
Q |
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| T |
42113277 |
atgcctcatgaagctgcttataatctgtacaattcagtcacaggatatggtcctagtcgggatgggcaacatcaacaactgcagcctggtcccgccgcaa |
42113178 |
T |
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| Q |
159 |
acattgatccaattattaggcagccagagaatgctgcaatcactatgcctgcagcaaatatgaaaggtgacgaaatcacaggaggagacataaattattt |
258 |
Q |
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||| ||| ||| |||||||| ||||||||||||||||| |||||||||||||||||| |||| ||||| ||||| | ||||||| ||| |||||| | |
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| T |
42113177 |
acagtgaacca---attaggcaaccagagaatgctgcaataactatgcctgcagcaaatgtgaatggtgatgaaattatcggaggaggcatgaattatat |
42113081 |
T |
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| Q |
259 |
cgctaaagacgcattccaaaacgagctggataggtttggatcaccaattactaacatgtcatttgattttggagttcttgacaat |
343 |
Q |
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| T |
42113080 |
tgctaaagacacattcccaaacgagctggataggtttggatcaccgttgagtaacatgtcatttgattttggagttcttgacaat |
42112996 |
T |
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