View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2832_high_5 (Length: 327)
Name: NF2832_high_5
Description: NF2832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2832_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 31138487 - 31138785
Alignment:
| Q |
11 |
atgaactcggataaattcaaactagagctagccttcaaagactactagagtgtcatatgaatatggtatcctaatatcctatgcatgagaatagaacaat |
110 |
Q |
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| T |
31138487 |
atgaactcggataaattcacactagagctagccttcaaagactactagagtgtcatatgaatatgatatcctaatatcctatgcatgagaatagaacaat |
31138586 |
T |
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| Q |
111 |
agtggcgaataaacaataaaagggaaaacaatcagaatagtgcaaaaactatctgattgacaacaagctctcactggggttggaaacaatcatgatcagg |
210 |
Q |
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| T |
31138587 |
agtggcgaataaacaataaaagggaaaacaatcagaatagtgcaaaaactatctgattgacaacaagctctcactggggttggaaacaatcatgatcagg |
31138686 |
T |
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| Q |
211 |
atagatatcgaagggaaagagatgtggtgatggtggaaactttgatgaatggtgatggtggaagcatgtaattagaaatttagaaattcaggacatctat |
310 |
Q |
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| T |
31138687 |
atagatatcgaagggaaagaga--tggtgatggtggaaactttgatgaatggtgatggtggaagcatgtaattagaaatttagaaattcaggacatctat |
31138784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 89 - 310
Target Start/End: Complemental strand, 31102423 - 31102209
Alignment:
| Q |
89 |
ctatgcatgagaatagaacaatagtggcgaataaacaataaaagggaaaacaatcagaatagtgcaaaaactatctgattgacaacaagctctcact-gg |
187 |
Q |
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| T |
31102423 |
ctatgcatgagaatagaacaatagtggcgaataaacaataaaagggaaaacaatcagaatagtgcaaaaactattcgattgacaacaagctctcactggg |
31102324 |
T |
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| Q |
188 |
ggttggaaacaatcatgatcaggatagatatcgaagggaaagagatgtggtgatggtggaaactttgatgaatggtgatggtggaagcatgtaattagaa |
287 |
Q |
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| T |
31102323 |
ggttggaaacaatcatgaccaggatagatatctaaggggaaga--------gatggtggaaactttgatgaatggtgatggtggaaacatgtaattagaa |
31102232 |
T |
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| Q |
288 |
atttagaaattcaggacatctat |
310 |
Q |
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| T |
31102231 |
atttagaaattcgggacatctat |
31102209 |
T |
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